PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G207300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 367aa    MW: 40778.3 Da    PI: 6.7309
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G207300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.4e-18229316196
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k++++s+v++  +l lp +f++++  ++ +++ ++lede+g +++  +   +k+ +  l++GW++F+  ++L++gD++vF+l ++++f 
  Sevir.3G207300.1.p 229 FVKTMVRSHVSSCFWLGLPTSFCKQNL-PP-TEFRMVLEDEDGVEFDAIY--IGKRTG--LSGGWRGFAMHHNLEDGDSLVFELAEHDRF- 312
                         89*********************8885.43.5689***************..555544..***********************9887888. PP

                         .EEEE CS
                  B3  92 lvvkv 96 
                          ++ +
  Sevir.3G207300.1.p 313 -KIYI 316
                         .5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-23222318IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-20223318IPR015300DNA-binding pseudobarrel domain
CDDcd100171.99E-26227318No hitNo description
PfamPF023625.7E-17229317IPR003340B3 DNA binding domain
PROSITE profilePS5086312.28229320IPR003340B3 DNA binding domain
SMARTSM010192.3E-21229320IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAEISLDGGG SRARIEGEVG GLDEHYVESV GAACEFDSFD EVHPSAELHY GRTRKAPSPF  60
AFSLPCLAYR ERDRDQGGLG ERVAAGGDMA TKASSAASGA AYEEQRRKRV LENLKHLEDL  120
GISEMSKSLL QAARLQKQSK GGVRVSPKAR KKFDATEVRR SSRAKATVSY KDDYGELDTF  180
LRRKRRSGGK NSEQGREYTG RVSSYEQQQR AFRRAEKLQD GLDPNNPSFV KTMVRSHVSS  240
CFWLGLPTSF CKQNLPPTEF RMVLEDEDGV EFDAIYIGKR TGLSGGWRGF AMHHNLEDGD  300
SLVFELAEHD RFKIYIIKAI DDDDVEEDES DDKNASGGTK EEPAEEDSPA AEPPKGAKRR  360
KLRGRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1353359PKGAKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G207300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0402170.0BT040217.1 Zea mays full-length cDNA clone ZM_BFc0072G10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700381.20.0B3 domain-containing protein Os05g0481400
SwissprotQ5KQI41e-130Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLK3Z8P60.0K3Z8P6_SETIT; Uncharacterized protein
STRINGSi022916m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.15e-42B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]