PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G207300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 367aa MW: 40778.3 Da PI: 6.7309 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.7 | 4.4e-18 | 229 | 316 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k++++s+v++ +l lp +f++++ ++ +++ ++lede+g +++ + +k+ + l++GW++F+ ++L++gD++vF+l ++++f Sevir.3G207300.1.p 229 FVKTMVRSHVSSCFWLGLPTSFCKQNL-PP-TEFRMVLEDEDGVEFDAIY--IGKRTG--LSGGWRGFAMHHNLEDGDSLVFELAEHDRF- 312 89*********************8885.43.5689***************..555544..***********************9887888. PP .EEEE CS B3 92 lvvkv 96 ++ + Sevir.3G207300.1.p 313 -KIYI 316 .5555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-23 | 222 | 318 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-20 | 223 | 318 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.99E-26 | 227 | 318 | No hit | No description |
Pfam | PF02362 | 5.7E-17 | 229 | 317 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.28 | 229 | 320 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-21 | 229 | 320 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MAEISLDGGG SRARIEGEVG GLDEHYVESV GAACEFDSFD EVHPSAELHY GRTRKAPSPF 60 AFSLPCLAYR ERDRDQGGLG ERVAAGGDMA TKASSAASGA AYEEQRRKRV LENLKHLEDL 120 GISEMSKSLL QAARLQKQSK GGVRVSPKAR KKFDATEVRR SSRAKATVSY KDDYGELDTF 180 LRRKRRSGGK NSEQGREYTG RVSSYEQQQR AFRRAEKLQD GLDPNNPSFV KTMVRSHVSS 240 CFWLGLPTSF CKQNLPPTEF RMVLEDEDGV EFDAIYIGKR TGLSGGWRGF AMHHNLEDGD 300 SLVFELAEHD RFKIYIIKAI DDDDVEEDES DDKNASGGTK EEPAEEDSPA AEPPKGAKRR 360 KLRGRR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 353 | 359 | PKGAKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G207300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040217 | 0.0 | BT040217.1 Zea mays full-length cDNA clone ZM_BFc0072G10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012700381.2 | 0.0 | B3 domain-containing protein Os05g0481400 | ||||
Swissprot | Q5KQI4 | 1e-130 | Y5814_ORYSJ; B3 domain-containing protein Os05g0481400 | ||||
TrEMBL | K3Z8P6 | 0.0 | K3Z8P6_SETIT; Uncharacterized protein | ||||
STRING | Si022916m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11370 | 33 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 5e-42 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G207300.1.p |
Publications ? help Back to Top | |||
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