PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G199800.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 332aa    MW: 36537.3 Da    PI: 8.2168
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G199800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.76.7e-104786541
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
              bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41
                        k+ rr+++NReAAr+sR+RKka++e+Le+   k ++Le+e
  Sevir.3G199800.2.p 47 KALRRLAQNREAARKSRLRKKAYVEQLENsrlKLAQLEQE 86
                        788*************************933334444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.9E-73991No hitNo description
SMARTSM003387.0E-643112IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.9794589IPR004827Basic-leucine zipper domain
PfamPF001704.7E-74785IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.63E-64789No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
PfamPF141443.4E-32128204IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAYASPGTDT STDLDTDEKN QMLELGRLAS LTASGSGDKS NDKLGQKALR RLAQNREAAR  60
KSRLRKKAYV EQLENSRLKL AQLEQELQRA RKQGIFIPTP GDQPHSTSEN ALAFDMGYAR  120
WQEDHKKQID ELRTALNAHA SDDDLRRITD SIMAHYCEAF RLKGAAAKAD AFHVLSAMWK  180
TPVERCFLWL GGFRPSELLK LLASHLEPLT EQQLASICNL QQSSQQAEED LSQGVKALQQ  240
SVAKTLASGP LCPAGSSGSA ADCSGQMAVA IGELGTLVNF LEEADNLRLQ TLQQMQRILT  300
TRQSARALLA ISDYSSRLRA LSSLWIARPR E*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G199800.2.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961656.10.0transcription factor TGAL1
SwissprotQ415581e-175HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLK3Z7V60.0K3Z7V6_SETIT; Uncharacterized protein
STRINGSi022626m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-146TGACG motif-binding factor 6