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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.3G198900.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
NF-YC |
Protein Properties |
Length: 343aa MW: 36827.1 Da PI: 4.9329 |
Description |
NF-YC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.3G198900.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NF-YC | 53.3 | 6.2e-17 | 35 | 115 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++ rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ s ++++++ +++dfl ++v +
Sevir.3G198900.1.p 35 DTHFSAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIRKGVKTVGSSHLKQCIQTYNVYDFLREVVSK 115
5678889*********************************************************************99976 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MRKKLDTRFP ALVDKLCSGE ETSGTVSGAM RKKLDTHFSA PRIKKIMQAD EDVGKIALAV 60 PVLVSKALEL FLQDLCDRTY DITIRKGVKT VGSSHLKQCI QTYNVYDFLR EVVSKVPDTG 120 TSDAIADDKL GKRRKAEEDG SEEELKRTRN EAESHTSNGR GRGRGRGRGR RGGRGAWREV 180 VITHEQFVEN QSSKPAGLKV EIADEVPDAT EAKEATPVSS ARASMRNIDL NLDPAEEDDE 240 VAVPPEAQPS APATDPAAAN LGLTAPATSS AAANLGLTTP ATSSAATTAG PSVPGLKEGA 300 KLKDLLGGWE LPDMNKMDMD PVQFALSSNH KLDDDEDYDN ED*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 159 | 168 | RGRGRGRGRG |
2 | 159 | 169 | RGRGRGRGRGR |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT055482 | 0.0 | BT055482.1 Zea mays full-length cDNA clone ZM_BFb0340H19 mRNA, complete cds. |