PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G196200.4.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 523aa    MW: 57396.3 Da    PI: 9.098
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G196200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.1e-082850326
                        S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                        t++C f+a+ G+C+ G +C+F H+
  Sevir.3G196200.4.p 28 TKICTFYAQ-GWCQNGKNCTFLHD 50
                        789******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.98E-82550IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.5252552IPR000571Zinc finger, CCCH-type
SMARTSM003560.00322551IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-62850IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-72852IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MLQPHVNALR LSSPSLGEYP ENKTKRVTKI CTFYAQGWCQ NGKNCTFLHD REGFGSAKAG  60
LLAPAGSGNH RGSEEGSQVQ HQSNLKVPQF KYAEGSSKYE LYRSLVHVYG EDNERLAHLA  120
DKQNLTTPGV SQGLPGSIDD SFTKRPTAPI NELVRSLVVH EKNHKPFMGH PIGLAAETRR  180
YLDVNTLNSD HQFQSSGMSI SSDTLQFREK LSAYGGTTDN LPNTHQKEHR SSHASYSSCN  240
LTGFRNLGYA TSEISLGSPS LRATSQLGIQ SHHLFRTGIE KVNLHRHIDV DKGCGTSRPA  300
LLSSSSLDPS IISAGPLSPI KDEVWETSVP FVPSFSFPTP PGSPYDPFVD CIEPPKVGNT  360
DNLKSSNISF SISSQHTNPD VITDKSLNRD DKLTRNMSAI GANGPACLIA SDRGRSSSLD  420
VNNRVKACDR KNNVGSSDEK ARDFRFHLAE HIKDLIKPIW KEGNLSKDAH KQVVKKSVEK  480
VVDSIEPNQV PTTKEMIAKY ITTNGSKIEK LVKAYVDRHR TA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G196200.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961627.10.0zinc finger CCCH domain-containing protein 36 isoform X2
SwissprotQ75K811e-156C3H36_ORYSJ; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A368QGQ90.0A0A368QGQ9_SETIT; Uncharacterized protein
STRINGSi021551m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-11C3H family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]