PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G176100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 269aa    MW: 29166.8 Da    PI: 5.4076
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G176100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07108133326
                         S---SGGGGTS...--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartG...tCkyGdrCkFaHg 26 
                          e+C++f+r      C++G+ C+FaHg
  Sevir.3G176100.1.p 108 GEPCPDFRR-RpgaACPRGSACPFAHG 133
                         689****99.558*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.38105135IPR000571Zinc finger, CCCH-type
SMARTSM003560.035105134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5106137IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5109133IPR000571Zinc finger, CCCH-type
SMARTSM0035625143166IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVSREHSHSY EHLVLDPAAL GSACSWADPA AVEIPPQLLA ALGEYLSAGR GDGDAAEAEA  60
EADDEFMMYE FKVRRCARAR SHDWTACPYA HPGEAARRRD PRRVAYTGEP CPDFRRRPGA  120
ACPRGSACPF AHGTFELWLH PSRYRTRPCR AGAACRRRVC FFAHAAAELR AASKDDGCSP  180
LSLSLSPKST LASLWESPPV SPVEGRVRWL DAIDEPSDAD AEVEELVLAM RELSFRKAAA  240
SAPVAAPVLP PVTEEDGPDL GWVSELVM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G176100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961434.10.0zinc finger CCCH domain-containing protein 37
SwissprotQ65X921e-139C3H37_ORYSJ; Zinc finger CCCH domain-containing protein 37
TrEMBLK3Z8T80.0K3Z8T8_SETIT; Uncharacterized protein
STRINGSi022958m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112091926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.14e-35C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]