PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G174600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 233aa    MW: 24009.1 Da    PI: 9.0973
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G174600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.2e-32145203159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r a+d+ +v++tYeg Hnh+
  Sevir.3G174600.1.p 145 LDDGYRWRKYGQKAVKNSAYPRSYYRCTHHTCNVKKQVQRLAKDTGIVVTTYEGVHNHP 203
                         59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-33131203IPR003657WRKY domain
SuperFamilySSF1182901.57E-28137204IPR003657WRKY domain
PROSITE profilePS5081128.828140205IPR003657WRKY domain
SMARTSM007741.3E-37145204IPR003657WRKY domain
PfamPF031062.8E-25146203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MENPLHGSGQ QPSPQLPGYL ASPVAAAPQQ ACTNPIAPGL GAMSCPPPAA AVDWASLLLP  60
CAPGSLHVGT TMPQQAVAGA GAGEVESGGG GAVVVAGGCG GSSSSTSGDG DKATRAGGGK  120
GGGRGRKKAS QPRFAFQTRS ENDILDDGYR WRKYGQKAVK NSAYPRSYYR CTHHTCNVKK  180
QVQRLAKDTG IVVTTYEGVH NHPCEKLMEA LSPILKQLQL LSQLQCSTNQ LI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-25136202874Probable WRKY transcription factor 4
2lex_A4e-25136202874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G174600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9580741e-136EU958074.1 Zea mays clone 1671428 WRKY23 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961423.11e-117probable WRKY transcription factor 56
TrEMBLK3ZET81e-116K3ZET8_SETIT; Uncharacterized protein
STRINGSi025086m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.13e-47WRKY DNA-binding protein 56