 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sevir.3G169000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
AP2 |
| Protein Properties |
Length: 414aa MW: 45326.8 Da PI: 8.813 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.3G169000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 50.4 | 5.3e-16 | 72 | 131 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g
Sevir.3G169000.1.p 72 SRFRGVSRHRWTGRFEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 131
789******************888855666447*************************98 PP
|
| 2 | AP2 | 51.2 | 3e-16 | 174 | 225 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV +++++grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g
Sevir.3G169000.1.p 174 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYKG 225
89****************99966...3.6***********************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 414 aa
Download sequence Send
to blast |
MENLMMVKNE IESYAAGPAP AVAIGAAEGG EASQVVVRRR RREPALLAPI SGGANGSGIG 60
KPVPSITVKR SSRFRGVSRH RWTGRFEAHL WDKNSWNPTQ RKKGKQVYLG AYDEEEAAAR 120
AYDLAALKYW GPTTYTNFPV VDYEKELKIM ENLTKEEYLA SLRRKSSGFS RGVSKYRGVA 180
RHHQNGRWEA RIGRVFGNKY LYLGTYSTQE EAARAYDIAA IEYKGVNAVT NFDLRSYITW 240
LKPSPSAPVT FNPEALMMQT TPAEQLLPAE TQMLLPRGNP FLLDHINASP AASSGAGGQE 300
ASMSMMMSPG GARKRGSPTA LGLLLRSSMF RQLVEKNSDA EEAGHGIGEA AAHQEAYEYH 360
NFFQGEAPDM CDLFSSGNNG RARDGGFQGE IACYDDGERL DGWSGFGNVS SLQ*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 97 | 105 | PTQRKKGKQ |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY685112 | 1e-158 | AY685112.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D4 (AP2D4) mRNA, complete cds. |
