PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G169000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 414aa    MW: 45326.8 Da    PI: 8.813
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G169000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.3e-1672131155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Sevir.3G169000.1.p  72 SRFRGVSRHRWTGRFEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 131
                         789******************888855666447*************************98 PP
2AP251.23e-16174225155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++++grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Sevir.3G169000.1.p 174 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYKG 225
                         89****************99966...3.6***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-1672140IPR016177DNA-binding domain
PfamPF008471.7E-1272131IPR001471AP2/ERF domain
PROSITE profilePS5103219.80973139IPR001471AP2/ERF domain
SMARTSM003805.6E-2573145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1573139IPR001471AP2/ERF domain
CDDcd000182.52E-23174233No hitNo description
SuperFamilySSF541712.68E-17174234IPR016177DNA-binding domain
PfamPF008473.8E-11174225IPR001471AP2/ERF domain
PROSITE profilePS5103218.979175233IPR001471AP2/ERF domain
SMARTSM003801.7E-26175239IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-17175233IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MENLMMVKNE IESYAAGPAP AVAIGAAEGG EASQVVVRRR RREPALLAPI SGGANGSGIG  60
KPVPSITVKR SSRFRGVSRH RWTGRFEAHL WDKNSWNPTQ RKKGKQVYLG AYDEEEAAAR  120
AYDLAALKYW GPTTYTNFPV VDYEKELKIM ENLTKEEYLA SLRRKSSGFS RGVSKYRGVA  180
RHHQNGRWEA RIGRVFGNKY LYLGTYSTQE EAARAYDIAA IEYKGVNAVT NFDLRSYITW  240
LKPSPSAPVT FNPEALMMQT TPAEQLLPAE TQMLLPRGNP FLLDHINASP AASSGAGGQE  300
ASMSMMMSPG GARKRGSPTA LGLLLRSSMF RQLVEKNSDA EEAGHGIGEA AAHQEAYEYH  360
NFFQGEAPDM CDLFSSGNNG RARDGGFQGE IACYDDGERL DGWSGFGNVS SLQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197105PTQRKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G169000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851121e-158AY685112.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D4 (AP2D4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961382.10.0ethylene-responsive transcription factor WRI1
TrEMBLK3Z6L70.0K3Z6L7_SETIT; Uncharacterized protein
STRINGSi022186m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-80AP2 family protein