PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G169000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | AP2 | ||||||||
Protein Properties | Length: 414aa MW: 45326.8 Da PI: 8.813 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.4 | 5.3e-16 | 72 | 131 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g Sevir.3G169000.1.p 72 SRFRGVSRHRWTGRFEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 131 789******************888855666447*************************98 PP | |||||||
2 | AP2 | 51.2 | 3e-16 | 174 | 225 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g Sevir.3G169000.1.p 174 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYKG 225 89****************99966...3.6***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.18E-16 | 72 | 140 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-12 | 72 | 131 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.809 | 73 | 139 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-25 | 73 | 145 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-15 | 73 | 139 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.52E-23 | 174 | 233 | No hit | No description |
SuperFamily | SSF54171 | 2.68E-17 | 174 | 234 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.8E-11 | 174 | 225 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.979 | 175 | 233 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-26 | 175 | 239 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-17 | 175 | 233 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MENLMMVKNE IESYAAGPAP AVAIGAAEGG EASQVVVRRR RREPALLAPI SGGANGSGIG 60 KPVPSITVKR SSRFRGVSRH RWTGRFEAHL WDKNSWNPTQ RKKGKQVYLG AYDEEEAAAR 120 AYDLAALKYW GPTTYTNFPV VDYEKELKIM ENLTKEEYLA SLRRKSSGFS RGVSKYRGVA 180 RHHQNGRWEA RIGRVFGNKY LYLGTYSTQE EAARAYDIAA IEYKGVNAVT NFDLRSYITW 240 LKPSPSAPVT FNPEALMMQT TPAEQLLPAE TQMLLPRGNP FLLDHINASP AASSGAGGQE 300 ASMSMMMSPG GARKRGSPTA LGLLLRSSMF RQLVEKNSDA EEAGHGIGEA AAHQEAYEYH 360 NFFQGEAPDM CDLFSSGNNG RARDGGFQGE IACYDDGERL DGWSGFGNVS SLQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 105 | PTQRKKGKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G169000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY685112 | 1e-158 | AY685112.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D4 (AP2D4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961382.1 | 0.0 | ethylene-responsive transcription factor WRI1 | ||||
TrEMBL | K3Z6L7 | 0.0 | K3Z6L7_SETIT; Uncharacterized protein | ||||
STRING | Si022186m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4162 | 34 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 5e-80 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G169000.1.p |