 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sevir.3G150900.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
Trihelix |
| Protein Properties |
Length: 344aa MW: 37074.9 Da PI: 10.5573 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.3G150900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 47.1 | 6.3e-15 | 37 | 123 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84
+W++ e+ aL+ a ++ +l+rg+l++++W+ev++++ ++r r+ +qCk++ + l+k+yk++++++ s +++f++
Sevir.3G150900.1.p 37 CWSDGETAALVSAWGSRYVELNRGNLRQKQWQEVADAVnsrrgasARRRPPRTDVQCKNRVDTLKKKYKAERARNAP------SGWSFFHE 121
7*****************************************999999999************************97......47****** PP
trihelix 85 le 86
l+
Sevir.3G150900.1.p 122 LD 123
98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MEVREMAMAA AAAAAAAGGG GGKLPPPNPN LPYREDCWSD GETAALVSAW GSRYVELNRG 60
NLRQKQWQEV ADAVNSRRGA SARRRPPRTD VQCKNRVDTL KKKYKAERAR NAPSGWSFFH 120
ELDRLVGPTL SASASKRPPS SSPATQFAMP MPLHPPAVRN HASPSPSPPP PMALPLPNYH 180
HRRSPLPAAA LIQKEAAAAA APVSDSEDSD DVGGNNNHNS QRSPSHSVSS LSGNNKKRSR 240
DEAGSGGDKG CKELARAIEA FAEMYERVES AKQKHALQME RQRIEFLKQL EVKRMENFVE 300
AHVKLARAKR PKKTKVGTTD GAGAMELVAT VASLPFVSTS TLL*
|
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT3G58630.1 | 5e-31 | sequence-specific DNA binding transcription factors |
