![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.3G149700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 1848aa MW: 205543 Da PI: 5.3577 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.6e-19 | 50 | 104 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ +++++yp++++r+eL+ +lgLt+rq ++WF+ rR k++k Sevir.3G149700.1.p 50 KRVMKTPYQLEVLERTYAEDSYPNETKRAELSVQLGLTDRQLQMWFCHRRLKDRK 104 79999************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.64E-17 | 34 | 104 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-17 | 35 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.422 | 45 | 105 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.1E-17 | 47 | 109 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.58E-14 | 50 | 105 | No hit | No description |
Pfam | PF00046 | 1.1E-16 | 50 | 104 | IPR001356 | Homeobox domain |
SMART | SM00571 | 2.9E-18 | 610 | 669 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 16.1 | 610 | 669 | IPR018501 | DDT domain |
Pfam | PF02791 | 8.9E-16 | 612 | 666 | IPR018501 | DDT domain |
Pfam | PF05066 | 1.7E-15 | 792 | 859 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 9.1E-9 | 1002 | 1044 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 2.5E-13 | 1181 | 1252 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1848 aa Download sequence Send to blast |
MESSGDGGDE GAGAAAVGMG SPGPASAPAA VGGGGSGAGA SGSGGKPPVK RVMKTPYQLE 60 VLERTYAEDS YPNETKRAEL SVQLGLTDRQ LQMWFCHRRL KDRKPPAKRQ QRDEEVTVPV 120 IAPPPVLPPP LPHSEIMVGT VGTYGEQLLP YSRRGPGRSS AVPRISVPEI GRRYYEPPQV 180 ILPHMAAVHL TQAEHRMIDS VETLIGEPLR DDGPVLGVEF DPLPPGAFGA PIVPEQPKQP 240 YRSYEPKMFS GRDPKPMKAS AFLPTIDPLL PNTVNGKRKS LVGSSSHLGS QAVHEYQFLP 300 EQPSDVYERA SQSRFYDTST EASNSRIASL STGSRFLHGV EQAPSYAFHG QLSGSSHLAQ 360 HGRSPIPSGS TDHEGALSNI NVSPAPFHGQ FGIPQVAGFE TPLASSERMG YHDEDTYRVD 420 RKRKHNEEAK IAKEVEAHEK RIRKELEKQD LLNRKREEQM RRETERHDRE RRKEEERLMR 480 ERQREEERFQ KEQRREHKRM EKFMQKQSIR AEKLRQKEEL RREKEAARQK AANEKATARR 540 IAREAMELME DERLELLELA YRSKGLPSMV SLDIDTLQQL DSFRGMLGQF PPETVRLKVP 600 FSTKPWAASE DNIGNLLMVW KFFITFADVL GLPSFTLDEF VQALHDYDSR FLGELHVALL 660 KSIIKDIEDV ARTPSVALGV NQSGSANPGG GHPQIVEGAY AWGFNILNWQ RHLNFLTWPE 720 ILRQFGLCAG FGPQLKKRNA GTVHYRDDNE GRDGADIIST LRNGSAAVNA AALMKERGYT 780 NRRRSRHRLT PGTVKFAAYH VLSLEGSKGL TILEVAEKIQ KSGLRDLTTS KTPEASISAA 840 LSRDTKLFER TAPSTYCVKT PYRKDPADSE TVLSAAREKI RVFQNALSEC EEVEKDVDEA 900 ERDADSECDD ADDDVDGDDM NIEDKDVKSP LVRAQDGAPV TVVGDIKQES NSVVNTLVPQ 960 STQTKCSESV SLRTLDIKAS TSTDPVVGDD VKDNEIDESN QGESWVQGLT EGDYCDLSVD 1020 ERLNALVALI GVATEGNSIR AILEERLEAA SALKKQMWAE AQLDKRRIRE DFTSKIQYDS 1080 CVGLKVDTDR ENNAAESTLT PVHNPIKNND GNANTANTDL LVDKQNQHIT GDIAHHQNGV 1140 SRESTINPES LSVQQYASSE KTRSQLKSYI GHKAEQLYIY RSLPLGQDRR RNRYWQFSAS 1200 SSSYDPGSGR IFFESRDGYW RVIDSAEAFE ALVASLDTRG IRESHLHSML QSIEPTFKEA 1260 VEKKRCSSLE HPAGRILKNG SNEIISTNHG NEFGSPCSIL SGVASDNVAH SDTFKIELGR 1320 NEAEKIAISK RAYVFVKWMW RECYSHQSTY AMKYGKKRWP ELIQSCDYCY QIYLAEERHC 1380 SSCHKTFKPI HNFLEHSSQC EEKHRTDPNW KMQIVDHSVP IGLRLLKLLL ATIEASIPAE 1440 ALQPFWTDGY RKSWGVKLYS ASSAEEVLQM LSMLEGAVKR DYLSSNFETT IELLNLNTQD 1500 TNQNSVARSG SATVLPWVPD TTAAIALRLF DLDSSISYTL HPKAASNKER EAGDFTNLPP 1560 RHPTIKNKQE IDQFGSIGFD QQYGVLLTNS NGRRGRGRGS RGGSRGGRSH SRGGKVPRGI 1620 SSSSRIQFRD DNNGSYEKGP RKIAKNTRGR GRGRGRGRGR GRGLRTVRPR QPSELGIRSI 1680 PKANLLGSFS MLSKANRSGK MHSPESSGAE DWALERREYV EDDDNNSVSQ SDESEENEEN 1740 GEPLNEEYDD ELVPGYPRDN SESSPLQMMD DGSEDNDEDA EGDEDGEDGE DYEAEDPVGD 1800 EDDDVEMGGD GEIGDEDDDD DDDDGGDGVG NADVDEGGTS YSSEYSE* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 1651 | 1661 | RGRGRGRGRGR |
2 | 1653 | 1662 | RGRGRGRGRG |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.3G149700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961229.1 | 0.0 | homeobox-DDT domain protein RLT2 | ||||
TrEMBL | K3Z331 | 0.0 | K3Z331_SETIT; Uncharacterized protein | ||||
STRING | Si020949m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2283 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.3G149700.1.p |