PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G149500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 316aa    MW: 34160.3 Da    PI: 9.3198
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G149500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.62.5e-32602071128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 
                         lp+G++F+Ptd+el+ e+L+ k++ ++      +   +    +i+   +i++++P++Lp  v+++    +fF++ +++y+tg+rk+r+   
  Sevir.3G149500.1.p  60 LPAGVKFDPTDQELL-EHLEGKARPDSrrlhplV---DefipTIEGEnGICYTHPERLP-GVNKDGLVRHFFHRPSRAYTTGTRKRRKvhs 145
                         799************.99****998886675442...133323665557**********.666666788******************8688 PP

                 NAM  78 ..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                     + +W++tgk+++vls +g+  g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Sevir.3G149500.1.p 146 gdgddgasgaGGETRWHKTGKTRPVLS-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 207
                         888888876544778************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-3851226IPR003441NAC domain
PROSITE profilePS5100532.34460226IPR003441NAC domain
PfamPF023652.5E-1461207IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MTWCNGFNDV ESSLSPAAAV AAAGKKAAAS LAVLVKMCPS CGHRAQYEQE TTTIQDLPGL  60
PAGVKFDPTD QELLEHLEGK ARPDSRRLHP LVDEFIPTIE GENGICYTHP ERLPGVNKDG  120
LVRHFFHRPS RAYTTGTRKR RKVHSGDGDD GASGAGGETR WHKTGKTRPV LSNGRPRGYK  180
KILVLYTNYG KQRKPEKTNW VMHQYHLGSD EEERDGELVV SKVFFQTQPR QCGSTAAKEA  240
VAANAVANSN AHALGGHQQG GSVLREANGV DQFYNPGTMM GYGQGVPNNR VPPAPAAAHF  300
MPNFAVHAAR ATFGP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G149500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009830.0AK100983.1 Oryza sativa Japonica Group cDNA clone:J023145A15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961226.10.0NAC domain-containing protein 73
SwissprotO494591e-121NAC73_ARATH; NAC domain-containing protein 73
TrEMBLK3Z8400.0K3Z840_SETIT; Uncharacterized protein
STRINGSi022710m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-113NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]