PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G145600.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 478aa    MW: 49386.4 Da    PI: 7.3109
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G145600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.5e-31227285259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++vv++tYeg+Hnh+
  Sevir.3G145600.2.p 227 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDTTVVITTYEGSHNHP 285
                         7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-34211287IPR003657WRKY domain
SuperFamilySSF1182904.58E-28219287IPR003657WRKY domain
PROSITE profilePS5081130.561221287IPR003657WRKY domain
SMARTSM007742.1E-37226286IPR003657WRKY domain
PfamPF031061.1E-26228285IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MGLHVGRRKS GSEDSIVDDG VSSNELALAK SEIGRLNEEN KQLKNMLGRV TTSYNSLQVQ  60
VLTLMQQRNN HRSLGAPSHE LNVDPENKDQ DGSLLPRQFI SLGTAALPDE PPLRSAGGEC  120
SASPSNTDAA MPTPPDYFPG KGNGVVLGSK DVMPLPTFDH HHRAQEREQG GSSPEDPPPP  180
HHVSQGWLPS KVPKFLPAKG SEPVPEAATM RKARVSVRAR SEAAMISDGC QWRKYGQKMA  240
KGNPCPRAYY RCTMAAGCPV RKQVQRCAED TTVVITTYEG SHNHPLPPAA MPMATTTAAA  300
AAMLLSGSMP SADGSLMAGS NFLARAVLPC SSNVATISAS APFPTVTLDL TQPGPGAQSQ  360
QQPQQPARPD PAQLQAALAE AARPVALPQL FGQKLYDPSK HSAVQAAAAP DAGDTVSAAA  420
VIASDPNFPA VLAAAIKSYI GGSSGGGGGG AGGSSGTVPP PPASGGGDSS RDDKIGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-23217287877Probable WRKY transcription factor 4
2lex_A9e-23217287877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G145600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209861e-137AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149611e-137AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963595.10.0WRKY transcription factor 42
TrEMBLA0A368QET00.0A0A368QET0_SETIT; Uncharacterized protein
TrEMBLK3ZC050.0K3ZC05_SETIT; Uncharacterized protein
STRINGSi024078m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.13e-74WRKY family protein