PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.3G141700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 294aa MW: 31452.9 Da PI: 5.5478 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 80.1 | 2.4e-25 | 124 | 185 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg +WrKYGqK++ g+++pr+Y+rCt++ gC ++k+v+r+a dp + +++Y+g H++ Sevir.3G141700.2.p 124 LDDGISWRKYGQKDILGAKYPRAYFRCTHRhtqGCAATKHVQRAAGDPLLYDVVYHGAHTCA 185 58***************************98999**************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-26 | 114 | 186 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-24 | 119 | 185 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.23 | 119 | 182 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-37 | 124 | 186 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-24 | 125 | 184 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 294 aa Download sequence Send to blast |
MEVCGVGGGE KSALASELAQ MQAMVRELGA HMDQQDLPAA VRELCGELCG ELASSVDRSI 60 RIARSCGLAG ADSPGSRDGS PRSASDGTQH PAAAAGGNAQ SKRRKGTPCV RRQVRVASVD 120 MAPLDDGISW RKYGQKDILG AKYPRAYFRC THRHTQGCAA TKHVQRAAGD PLLYDVVYHG 180 AHTCAQAAHP GAEQLRQQLQ LQPEPGHADA GQEQSSPPLA LQETEGLQAG PEPMTPYWFG 240 APAPGDGADF PLLSPTGLEW QLRSMDHETQ FEEFYTNAAD PSQWDYQDLY ATN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-19 | 118 | 184 | 2 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.3G141700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KU058619 | 1e-131 | KU058619.1 UNVERIFIED: Panicum miliaceum WRKY1-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961161.1 | 0.0 | probable WRKY transcription factor 53 isoform X2 | ||||
TrEMBL | K3Z8H3 | 0.0 | K3Z8H3_SETIT; Uncharacterized protein | ||||
STRING | Si022843m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G24110.1 | 2e-32 | WRKY DNA-binding protein 30 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.3G141700.2.p |