PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G119800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 305aa    MW: 32690.4 Da    PI: 4.2918
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G119800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-05279301223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +C+ C+k+F++ + L+ H +  H
  Sevir.3G119800.1.p 279 PCKSCSKTFNSEMALQAHSKAkH 301
                         6*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.034278304IPR007087Zinc finger, C2H2
PROSITE patternPS000280280301IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEFWGLEVKP GTTVKCEPGE GYILHLSQAA LGESKKSDNA LMYVKVDDQK LAIGTLSLDK  60
YPQIQFDLVF DKEFELSHTS KAASVFFSGY KVEQPGEVDE MDFDSEEDED EEEELENPVI  120
KANGKAGAKE DQKSQGKAGA AASKSSAAVK DVEMKSKDDD DSDEDETDDS DDDDLSAEEG  180
DDDDSSDEGD SSEDDEDSEE EEEETPTPKK PEGGKKRAAE NALKTPVSDK KAKVATPSGQ  240
KTGGKKGVTH VATPHPAKKT PANNDKSKEK SPKSGGSVPC KSCSKTFNSE MALQAHSKAK  300
HGAK*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G119800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960961.10.0histone deacetylase HDT2
SwissprotQ9M4U51e-130HDT2_MAIZE; Histone deacetylase HDT2
TrEMBLK3Z8A80.0K3Z8A8_SETIT; Uncharacterized protein
STRINGSi022778m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.23e-29histone deacetylase 3