PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G113300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 345aa    MW: 38231.8 Da    PI: 8.6859
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G113300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.58.1e-34501961128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 
                         lp+G++F+P+d+el+ e+L+  v++        +   +    +ik   +i++++P++Lp  v+ +    +fF++++k+y+tg+rk+r+   
  Sevir.3G113300.1.p  50 LPAGVKFDPSDQELI-EHLESLVKEGGsrahplI---DdfipTIKGDdGICYTHPENLP-GVTRDGLTKHFFHRTSKAYTTGTRKRRKiqs 135
                         799************.99*****99985665432...133333665546**********.555666789******************8799 PP

                 NAM  78 .........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                  + +++W++tgk+++v++ +g+++g+kk+Lv+y   g++ k+ekt+Wvmh+y+l
  Sevir.3G113300.1.p 136 drglhgsedVGEARWHKTGKTRPVIV-GGQQKGCKKILVLYvnYGKQGKPEKTNWVMHQYHL 196
                         9999998887799*************.9*************7768999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-3644214IPR003441NAC domain
PROSITE profilePS5100531.78650214IPR003441NAC domain
PfamPF023651.3E-1451196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MNRGHSGSMV SSCCTSEPTE EKHKDRQTSA SRRCPSCGHS FDSNPDMIGL PAGVKFDPSD  60
QELIEHLESL VKEGGSRAHP LIDDFIPTIK GDDGICYTHP ENLPGVTRDG LTKHFFHRTS  120
KAYTTGTRKR RKIQSDRGLH GSEDVGEARW HKTGKTRPVI VGGQQKGCKK ILVLYVNYGK  180
QGKPEKTNWV MHQYHLGDQE EKDGQLVVSK VFYQTQLRSG TAMVEQRTRE GENVAEASEA  240
MQNVLPGCAA DATAATVAMV PQHQQKRQRQ STGGHCSIAT SKMSHEIGAV GNQVSRDQGE  300
KSVTTTTYHH NSMSDQICMQ NKYPPCLSMS VHHRTQFQQQ YNLK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G113300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960907.10.0NAC domain-containing protein 73
SwissprotQ9M0F81e-100NAC75_ARATH; NAC domain-containing protein 75
TrEMBLK3ZE960.0K3ZE96_SETIT; Uncharacterized protein
STRINGSi024889m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-101NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]