PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

ZF-HD

Protein Properties

Length: 316aa MW: 33800 Da PI: 9.1368

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G098600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.8	4.5e-32	77	130	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +vrY+eClkNhAa++Gg a+DGCgEfmp+ geeg+ +al+C+ACgCHRnFHR+e+ Sevir.3G098600.1.p 77 GVRYRECLKNHAAAIGGSATDGCGEFMPA-GEEGSLDALRCSACGCHRNFHRKEP 130 69************************9.999******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.9E-29	78	130	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	6.0E-22	79	130	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.4E-30	79	129	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.682	80	129	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	3.4E-30	202	274	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-19	204	274	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	4.8E-27	213	269	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MDLSGAQGEL PVPLAMHGGG GGSPYLGLHH GHHEHPQHHS HGANGRHMSP PEVVVPEEAK 60 NRQLAVVPVG AGGGGAGVRY RECLKNHAAA IGGSATDGCG EFMPAGEEGS LDALRCSACG 120 CHRNFHRKEP PGGDARQLHG HHHHHHHHPL SPLAAAHHHH HRGLLVAALP PAPTRMVMPL 180 SAMQQQANHS AASADSDDAR APGQQQQGPP PARKRFRTKF TAEQKARMLG FAEEAGWRLQ 240 KLDDAAVQRF CQEVGVKRRV LKVWMHNNKH TLARRGLPDG DPEQQLGGMP LPEPGGPGRS 300 PSRSPPPPQQ QLRLE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-24	214	271	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G098600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT043258	1e-155	BT043258.1 Zea mays full-length cDNA clone ZM_BFc0135C02 mRNA, complete cds.
GenBank	BT065005	1e-155	BT065005.1 Zea mays full-length cDNA clone ZM_BFc0120L10 mRNA, complete cds.
GenBank	BT065569	1e-155	BT065569.1 Zea mays full-length cDNA clone ZM_BFb0298N18 mRNA, complete cds.
GenBank	EU965508	1e-155	EU965508.1 Zea mays clone 286516 mRNA sequence.
GenBank	JX428500	1e-155	JX428500.1 Zea mays subsp. mays clone pUT3098 ZHD21 ZF-HD type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002443023.1	1e-152	zinc-finger homeodomain protein 3
Refseq	XP_021321592.1	1e-152	zinc-finger homeodomain protein 3
Swissprot	Q2QW44	2e-77	ZHD3_ORYSJ; Zinc-finger homeodomain protein 3
TrEMBL	K3Z843	0.0	K3Z843_SETIT; Uncharacterized protein
STRING	Si022713m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP815	35	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	1e-53	homeobox protein 31

Link Out ? help Back to Top
Phytozome	Sevir.3G098600.1.p