PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G063400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 189aa MW: 20121.1 Da PI: 7.2622 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00082 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Sevir.3G063400.1.p 44 FVCKTCNRAFPSFQALGGHRASH 66 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.68E-8 | 42 | 107 | No hit | No description |
Pfam | PF13912 | 3.0E-12 | 43 | 68 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.806 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.23 | 44 | 66 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.8 | 85 | 107 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.642 | 85 | 115 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.9E-8 | 85 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MKRFAVQESE MARVLMLMSH GQEPALPLLP VAAGRGDRAP ERVFVCKTCN RAFPSFQALG 60 GHRASHKKPR LDGDGDPSLA KPKLHGCSIC GLEFAIGQAL GGHMRRHRAM TGGMPPAATT 120 TIVVDKKPDV AIIHDDDGVK RGLWLDLNHP PCDDGCDAEA ECGHNAAAGI TFHQFLDTGT 180 MAVDCLGY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G063400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960500.1 | 1e-137 | zinc finger protein ZAT12 | ||||
TrEMBL | K3Z9Y2 | 1e-136 | K3Z9Y2_SETIT; Uncharacterized protein | ||||
STRING | Si023353m | 1e-136 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 1e-27 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G063400.1.p |