PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G056000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 306aa    MW: 33521.6 Da    PI: 5.1666
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G056000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.63.2e-131352342
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        i +k  rq  f kR ++++ KA  LS+LC++++av++++ 
  Sevir.3G056000.1.p 13 IAEKAVRQAAFRKRHTTLFDKARDLSILCQVQAAVVVYGR 52
                        678899********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-13162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.722351IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-17696IPR002100Transcription factor, MADS-box
CDDcd002667.39E-20787No hitNo description
PfamPF003198.5E-121352IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MPRRGGKIKI QWIAEKAVRQ AAFRKRHTTL FDKARDLSIL CQVQAAVVVY GRGEAEPKVW  60
PGVPEVTEIL QRYRDLPGSL KEAHKLDNEI FARQRAKKMR RRVDSCKATA RRLEVNLVLN  120
DVSLGRRRDF DDLPRELAAA VMSVLNAFRS VTADRVNFLR SADAQEAAFS PPLEEAAALM  180
ALREPPMVPP VAMAAPVVAN APLMPPTPPQ SALVVPLEEE EEPPMEPPMV ADASLLLPAV  240
EPESQATAAG MGADELLNLD AEPRNGSFLL EMADAIVDDG SGRQATAEDV DRLLREHGLE  300
SFKPM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G056000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304121.15e-88MADS-box transcription factor 56
TrEMBLA0A368QBR71e-142A0A368QBR7_SETIT; Uncharacterized protein
TrEMBLK3ZDZ11e-142K3ZDZ1_SETIT; Uncharacterized protein
STRINGSi024783m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2104367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.25e-14M-type_MADS family protein