PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G045500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | AP2 | ||||||||
Protein Properties | Length: 473aa MW: 51161.7 Da PI: 8.1936 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 5.9e-17 | 164 | 213 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Sevir.3G045500.2.p 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 213 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.4E-9 | 164 | 213 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-16 | 164 | 222 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.56E-10 | 165 | 223 | No hit | No description |
PROSITE profile | PS51032 | 17.794 | 165 | 221 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-32 | 165 | 227 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-17 | 165 | 222 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.28E-12 | 256 | 301 | No hit | No description |
SuperFamily | SSF54171 | 2.03E-6 | 256 | 300 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.2E-13 | 257 | 305 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MELDLNVAEV APEKPAAMAA SDSGSSESSV LNAEASGGGA APAAEGSSST PPPRAVLEFS 60 ILRIESDAAG ADDDDDATPS PPRHHHHHQQ QPQLITRELF PAVAGPPPQH WADLGFFRAA 120 EPPRPQPDIR ILPHPHPHAT PPAPPPVQPQ AAKKSRRGPR SRSSQYRGVT FYRRTGRWES 180 HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF NLSDYEDDMK QMKSLSKEEF 240 VHVLRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK AYDKAAIKCN GREAVTNFEP 300 STYDGELLTE VATEGADVDL NLSISQPSSQ SPKRDKNSLG LQLHHGSFEG SELKRTKIDT 360 PSELAGRPHR FPLMTEHPPI WPAQSHPFFT NNEGASRDIN RRPEGGTGSG VPSWAWKMTA 420 PPPTLPLPLF SSSSSSAAAS SGFSNTATTA APATPSASPR FDPPSSSSHH HR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G045500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806429.1 | 0.0 | ethylene-responsive transcription factor RAP2-7-like isoform X2 | ||||
Swissprot | B8AXC3 | 0.0 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | A0A368QBQ4 | 0.0 | A0A368QBQ4_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J23348.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.2 | 4e-88 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G045500.2.p |