PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G045500.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 473aa    MW: 51161.7 Da    PI: 8.1936
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G045500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.9e-17164213155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sevir.3G045500.2.p 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 213
                         78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-9164213IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-16164222IPR016177DNA-binding domain
CDDcd000181.56E-10165223No hitNo description
PROSITE profilePS5103217.794165221IPR001471AP2/ERF domain
SMARTSM003803.3E-32165227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-17165222IPR001471AP2/ERF domain
CDDcd000183.28E-12256301No hitNo description
SuperFamilySSF541712.03E-6256300IPR016177DNA-binding domain
SMARTSM003804.2E-13257305IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MELDLNVAEV APEKPAAMAA SDSGSSESSV LNAEASGGGA APAAEGSSST PPPRAVLEFS  60
ILRIESDAAG ADDDDDATPS PPRHHHHHQQ QPQLITRELF PAVAGPPPQH WADLGFFRAA  120
EPPRPQPDIR ILPHPHPHAT PPAPPPVQPQ AAKKSRRGPR SRSSQYRGVT FYRRTGRWES  180
HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF NLSDYEDDMK QMKSLSKEEF  240
VHVLRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK AYDKAAIKCN GREAVTNFEP  300
STYDGELLTE VATEGADVDL NLSISQPSSQ SPKRDKNSLG LQLHHGSFEG SELKRTKIDT  360
PSELAGRPHR FPLMTEHPPI WPAQSHPFFT NNEGASRDIN RRPEGGTGSG VPSWAWKMTA  420
PPPTLPLPLF SSSSSSAAAS SGFSNTATTA APATPSASPR FDPPSSSSHH HR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G045500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806429.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotB8AXC30.0AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A368QBQ40.0A0A368QBQ4_SETIT; Uncharacterized protein
STRINGPavir.J23348.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.24e-88related to AP2.7