PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G045500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 488aa    MW: 52889.6 Da    PI: 7.6209
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G045500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17164213155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sevir.3G045500.1.p 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 213
                         78*******************......55************************997 PP
2AP241.24.2e-13256306155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Sevir.3G045500.1.p 256 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 306
                         89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.95E-16164222IPR016177DNA-binding domain
PfamPF008475.6E-9164213IPR001471AP2/ERF domain
CDDcd000181.63E-10165223No hitNo description
PROSITE profilePS5103217.794165221IPR001471AP2/ERF domain
SMARTSM003803.3E-32165227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-17165222IPR001471AP2/ERF domain
CDDcd000182.26E-24256316No hitNo description
SuperFamilySSF541717.85E-17256315IPR016177DNA-binding domain
PfamPF008471.3E-8256306IPR001471AP2/ERF domain
SMARTSM003801.8E-32257320IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15257314IPR001471AP2/ERF domain
PROSITE profilePS5103215.527257314IPR001471AP2/ERF domain
PRINTSPR003675.2E-6258269IPR001471AP2/ERF domain
PRINTSPR003675.2E-6296316IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MELDLNVAEV APEKPAAMAA SDSGSSESSV LNAEASGGGA APAAEGSSST PPPRAVLEFS  60
ILRIESDAAG ADDDDDATPS PPRHHHHHQQ QPQLITRELF PAVAGPPPQH WADLGFFRAA  120
EPPRPQPDIR ILPHPHPHAT PPAPPPVQPQ AAKKSRRGPR SRSSQYRGVT FYRRTGRWES  180
HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF NLSDYEDDMK QMKSLSKEEF  240
VHVLRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE VEAARAYDKA  300
AIKCNGREAV TNFEPSTYDG ELLTEVATEG ADVDLNLSIS QPSSQSPKRD KNSLGLQLHH  360
GSFEGSELKR TKIDTPSELA GRPHRFPLMT EHPPIWPAQS HPFFTNNEGA SRDINRRPEG  420
GTGSGVPSWA WKMTAPPPTL PLPLFSSSSS SAAASSGFSN TATTAAPATP SASPRFDPPS  480
SSSHHHR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G045500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4020840.0JX402084.1 Phyllostachys edulis transcription factor AP2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806428.10.0floral homeotic protein APETALA 2-like isoform X1
SwissprotB8AXC30.0AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A368QBQ40.0A0A368QBQ4_SETIT; Uncharacterized protein
STRINGPavir.J23348.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.33e-99related to AP2.7