 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sevir.3G045500.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
AP2 |
| Protein Properties |
Length: 488aa MW: 52889.6 Da PI: 7.6209 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.3G045500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53.5 | 6.1e-17 | 164 | 213 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Sevir.3G045500.1.p 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 213
78*******************......55************************997 PP
|
| 2 | AP2 | 41.2 | 4.2e-13 | 256 | 306 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g
Sevir.3G045500.1.p 256 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 306
89********.7******5553..2.26**********99**********99776 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 488 aa
Download sequence Send
to blast |
MELDLNVAEV APEKPAAMAA SDSGSSESSV LNAEASGGGA APAAEGSSST PPPRAVLEFS 60
ILRIESDAAG ADDDDDATPS PPRHHHHHQQ QPQLITRELF PAVAGPPPQH WADLGFFRAA 120
EPPRPQPDIR ILPHPHPHAT PPAPPPVQPQ AAKKSRRGPR SRSSQYRGVT FYRRTGRWES 180
HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF NLSDYEDDMK QMKSLSKEEF 240
VHVLRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE VEAARAYDKA 300
AIKCNGREAV TNFEPSTYDG ELLTEVATEG ADVDLNLSIS QPSSQSPKRD KNSLGLQLHH 360
GSFEGSELKR TKIDTPSELA GRPHRFPLMT EHPPIWPAQS HPFFTNNEGA SRDINRRPEG 420
GTGSGVPSWA WKMTAPPPTL PLPLFSSSSS SAAASSGFSN TATTAAPATP SASPRFDPPS 480
SSSHHHR*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX402084 | 0.0 | JX402084.1 Phyllostachys edulis transcription factor AP2 mRNA, complete cds. |
