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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sevir.3G045300.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
C2H2 |
| Protein Properties |
Length: 379aa MW: 42878.7 Da PI: 8.596 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.3G045300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 21.6 | 5.8e-07 | 81 | 101 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C+ Cg+sF+ + +Lk+H+++H
Sevir.3G045300.1.p 81 CKECGMSFKKPAHLKQHMQSH 101
*******************99 PP
|
| 2 | zf-C2H2 | 19.3 | 3.1e-06 | 107 | 131 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
+ C+ C+ s+srk++L+rH+ tH
Sevir.3G045300.1.p 107 FACHidGCPLSYSRKDHLNRHLLTH 131
78*********************99 PP
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| 3 | zf-C2H2 | 14.6 | 9.4e-05 | 136 | 161 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
++Cp C++ F+ k n++rH + H
Sevir.3G045300.1.p 136 FVCPieGCDRKFNIKGNMQRHVQEmH 161
89*******************99877 PP
|
| 4 | zf-C2H2 | 20.8 | 1.1e-06 | 173 | 197 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
+ Cp +Cgk+F+ s Lk+H +H
Sevir.3G045300.1.p 173 FICPevNCGKTFKYASKLKKHEESH 197
78*******************9988 PP
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| 5 | zf-C2H2 | 14.9 | 7.8e-05 | 264 | 288 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23
kC+ dC+ sFs ksnL +H + H
Sevir.3G045300.1.p 264 KCHfeDCKCSFSKKSNLDKHVKAvH 288
7*******************99877 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00355 | 8.6 | 32 | 54 | IPR015880 | Zinc finger, C2H2-like |
| SMART | SM00355 | 0.0045 | 79 | 101 | IPR015880 | Zinc finger, C2H2-like |
| Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 79 | 98 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 14.025 | 79 | 106 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 3.07E-11 | 92 | 133 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 8.3E-14 | 99 | 133 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.0043 | 107 | 131 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.328 | 107 | 136 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 109 | 131 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 9.09E-7 | 117 | 167 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 5.2E-8 | 134 | 162 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 1.9E-4 | 136 | 161 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.533 | 136 | 166 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 138 | 161 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 9.6E-7 | 169 | 197 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 6.53E-5 | 170 | 199 | No hit | No description |
| SMART | SM00355 | 0.0032 | 173 | 197 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 11.281 | 173 | 197 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 175 | 197 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 6.5 | 205 | 230 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 207 | 230 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 15 | 233 | 254 | IPR015880 | Zinc finger, C2H2-like |
| SuperFamily | SSF57667 | 4.73E-6 | 244 | 305 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 9.3E-4 | 244 | 285 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.13 | 263 | 288 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 11.843 | 263 | 293 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 265 | 288 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 287 | 317 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 2.1 | 294 | 320 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.265 | 294 | 323 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 296 | 320 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 379 aa
Download sequence Send
to blast |
MGDGEHRVGE GEEAGGGAGA ATAAPMRDIR RYRCEFCGVV RSKKSLIRAH VLQHHKDEVG 60
DLEDYQEGGG SASRKEVTHG CKECGMSFKK PAHLKQHMQS HSLERPFACH IDGCPLSYSR 120
KDHLNRHLLT HQGKLFVCPI EGCDRKFNIK GNMQRHVQEM HKDGSPCESK KEFICPEVNC 180
GKTFKYASKL KKHEESHVEL DYTEVICCEP GCMKTFTNVE CLKAHNQSCH QHVQCDVCGT 240
KQLKRNFKRH RQMHEGSCVT ERVKCHFEDC KCSFSKKSNL DKHVKAVHEQ RRPFVCQFSG 300
CGKKFSYKHV RDNHEKSSAH VHTEGDFVEA DEQRPRSAGG RKRKPVSVET LMRKRVAAPD 360
DAPAHVDGTE HLRWLLSG*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
