PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G034600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 470aa    MW: 50725 Da    PI: 6.3645
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G034600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.6e-15129188155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Sevir.3G034600.1.p 129 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 188
                         57*******************666664477446*************************98 PP
2AP248.22.7e-15231282155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Sevir.3G034600.1.p 231 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 282
                         57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.68E-17129197IPR016177DNA-binding domain
PfamPF008472.6E-12129188IPR001471AP2/ERF domain
CDDcd000189.64E-22129198No hitNo description
PROSITE profilePS5103219.322130196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-16130197IPR001471AP2/ERF domain
SMARTSM003802.8E-29130202IPR001471AP2/ERF domain
PRINTSPR003672.4E-6131142IPR001471AP2/ERF domain
PfamPF008475.8E-10231282IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-18231292IPR016177DNA-binding domain
CDDcd000189.57E-25231292No hitNo description
Gene3DG3DSA:3.30.730.103.2E-18232290IPR001471AP2/ERF domain
SMARTSM003802.1E-33232296IPR001471AP2/ERF domain
PROSITE profilePS5103219.348232290IPR001471AP2/ERF domain
PRINTSPR003672.4E-6272292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MDTSHHYPWL NFSLAHHCDL EEEERGAAAE LAAIAGAAPP PKLEDFLGGG AAGGGPVPGA  60
ETAAAEMYDS ELKFIAAGFL PSGAAGAAAP SPSPVSSLDQ ADPKLALPAA AAPAPEQRKA  120
VDSFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD  180
LAALKYWGPS TTTNFPVAEY EKELEEMKNM TRQEFVASLR RKSSGFSRGA SIYRGVTRHH  240
QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE ISRYNVESII  300
SSNLPIGSMS ASGGRTSKAL ECTPSNSSDA MPVEASTTQQ FAALPVKYDQ QDYLSMLALQ  360
HHQQGNLQGL GFSLYSSGVN LDFANSHGTA SSMANCYANG ASHEQHQHHQ QLQDHQQDQA  420
QQSSNSCSSP PFAMPIAFSG SYESSMTPGP FGYSYPNVAA FQTPIYGME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G034600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118910.0AK111891.1 Oryza sativa Japonica Group cDNA clone:J033072A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960245.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-140AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLK3Z5Z10.0K3Z5Z1_SETIT; Uncharacterized protein
STRINGSi021959m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-122AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]