PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G034600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | AP2 | ||||||||
Protein Properties | Length: 470aa MW: 50725 Da PI: 6.3645 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.2 | 2.6e-15 | 129 | 188 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Sevir.3G034600.1.p 129 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 188 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 48.2 | 2.7e-15 | 231 | 282 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Sevir.3G034600.1.p 231 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 282 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.68E-17 | 129 | 197 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.6E-12 | 129 | 188 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.64E-22 | 129 | 198 | No hit | No description |
PROSITE profile | PS51032 | 19.322 | 130 | 196 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-16 | 130 | 197 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-29 | 130 | 202 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 131 | 142 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.8E-10 | 231 | 282 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-18 | 231 | 292 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.57E-25 | 231 | 292 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.2E-18 | 232 | 290 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-33 | 232 | 296 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.348 | 232 | 290 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 272 | 292 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MDTSHHYPWL NFSLAHHCDL EEEERGAAAE LAAIAGAAPP PKLEDFLGGG AAGGGPVPGA 60 ETAAAEMYDS ELKFIAAGFL PSGAAGAAAP SPSPVSSLDQ ADPKLALPAA AAPAPEQRKA 120 VDSFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD 180 LAALKYWGPS TTTNFPVAEY EKELEEMKNM TRQEFVASLR RKSSGFSRGA SIYRGVTRHH 240 QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE ISRYNVESII 300 SSNLPIGSMS ASGGRTSKAL ECTPSNSSDA MPVEASTTQQ FAALPVKYDQ QDYLSMLALQ 360 HHQQGNLQGL GFSLYSSGVN LDFANSHGTA SSMANCYANG ASHEQHQHHQ QLQDHQQDQA 420 QQSSNSCSSP PFAMPIAFSG SYESSMTPGP FGYSYPNVAA FQTPIYGME* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G034600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111891 | 0.0 | AK111891.1 Oryza sativa Japonica Group cDNA clone:J033072A06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960245.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-140 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | K3Z5Z1 | 0.0 | K3Z5Z1_SETIT; Uncharacterized protein | ||||
STRING | Si021959m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-122 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G034600.1.p |
Publications ? help Back to Top | |||
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