PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.3G030000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 303aa MW: 31368.5 Da PI: 9.7909 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.9 | 6.4e-07 | 105 | 130 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+G++C+FaHg+ Sevir.3G030000.1.p 105 KTRMCTKYNTVEGCKFGEKCHFAHGE 130 8999999999999***********96 PP | |||||||
2 | zf-CCCH | 38.1 | 2.6e-12 | 269 | 294 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC +f + GtC +GdrC+FaHg+ Sevir.3G030000.1.p 269 YKTKLCENFVK-GTCTFGDRCHFAHGE 294 9**********.*************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-7 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.324 | 37 | 65 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 38 | 62 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.5 | 45 | 62 | No hit | No description |
SMART | SM00356 | 0.39 | 103 | 130 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.45 | 103 | 131 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-8 | 104 | 133 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-12 | 105 | 134 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.042 | 109 | 129 | No hit | No description |
SuperFamily | SSF54791 | 1.12E-13 | 167 | 242 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 3.2E-14 | 171 | 241 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.6E-9 | 171 | 241 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 13.754 | 172 | 236 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 7.8E-10 | 174 | 237 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 4.76E-13 | 174 | 236 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-15 | 267 | 298 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-9 | 267 | 298 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-8 | 268 | 294 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.488 | 268 | 295 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.4E-10 | 269 | 294 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 303 aa Download sequence Send to blast |
MEGAAAARKR SRPETANGVA AGGKRSKETE SFQTGQSSKS KPCTKFFSTI GCPFGEGCHF 60 LHFVPGGYPA VAKMLNLGSP AVSAPARASV DHAAVANSHP ASTGKTRMCT KYNTVEGCKF 120 GEKCHFAHGE RELGRPAYMS HEGPPMGGRY GGRPEPLPPV AMGPPAGNFG ASATAKISVD 180 ASLAGGIIGK GGVNTKQICR VAGVKLSIRD HESDPNLKNI ELEGNFDQIK QASNMVSDLI 240 ASISASMPPK APPAPAGGRG GAPGGRSNYK TKLCENFVKG TCTFGDRCHF AHGENEQRRG 300 AA* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.3G030000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960205.1 | 0.0 | zinc finger CCCH domain-containing protein 31 | ||||
Swissprot | Q7XPK1 | 1e-161 | C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31 | ||||
TrEMBL | K3Z8B5 | 0.0 | K3Z8B5_SETIT; Uncharacterized protein | ||||
STRING | Si022785m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1254 | 38 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-49 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.3G030000.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|