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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sevir.3G012000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
NF-YC |
| Protein Properties |
Length: 129aa MW: 13541.4 Da PI: 6.9441 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.3G012000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 102.1 | 4e-32 | 22 | 108 | 19 | 99 |
NF-YC 19 helPlarikkilk......adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99
h+lPlarikki+k ad +mis eaPv++skacelfi e+t r+w + e krrt++k d+a+av +td fdflvd+v d
Sevir.3G012000.1.p 22 HALPLARIKKIMKrsageaADGGARMISGEAPVVFSKACELFIAEITRRAWAATLEGKRRTVHKEDVATAVHNTDLFDFLVDVVMAD 108
89**********955554457789***********************************************************9876 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 129 aa
Download sequence Send
to blast |
MRQARPYSGI FCGGVSARTG PHALPLARIK KIMKRSAGEA ADGGARMISG EAPVVFSKAC 60
ELFIAEITRR AWAATLEGKR RTVHKEDVAT AVHNTDLFDF LVDVVMADAG GGGHAAPGYD 120
DDENGALE*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ234502 | 1e-129 | HQ234502.1 Zea mays clone BAC ZMMBBb0342E21 DNA-binding protein, peroxisomal-CoA synthetase, cleavage and polyadenylation specificity factor 5, DNA mismatch repair protein, and putative potassium efflux system protein family genes, complete cds; and unknown gene. |
| GenBank | KJ727009 | 1e-129 | KJ727009.1 Zea mays clone pUT3990 CCAAT-HAP5 transcription factor (CA5P1) gene, partial cds. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Li S, et al.
HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
Plant Cell, 2014. 26(4): p. 1764-1780
[PMID:24728648] - Mei X, et al.
Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
[PMID:25851237] - Baud S, et al.
Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
Plant Physiol., 2016. 171(2): p. 1099-112
[PMID:27208266] - Zhao H, et al.
The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
Front Plant Sci, 2016. 7: p. 2045
[PMID:28119722]
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