PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G003900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 332aa    MW: 36715.3 Da    PI: 6.5064
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G003900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.74.5e-53271641128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...........kvkaeekewyfFskrdkkyatgkrknratks 80 
                         +ppGfrFhPt+eelv +yL++kv++++++  ++i+evd+y++ePwdL++              ++++ewyfFs +d+ky++g+r+nrat++
  Sevir.3G003900.1.p  27 VPPGFRFHPTEEELVGYYLARKVARSSCDDLDIIQEVDLYRIEPWDLQErcklggaaghdDGGQTTSEWYFFSYKDRKYPSGTRTNRATAA 117
                         69*************************9999****************95577777665442222455************************ PP

                 NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         g+Wkatg+dk+vls +++++g++ktLvfykgrap+g+ktdW+mheyrl
  Sevir.3G003900.1.p 118 GFWKATGRDKPVLS-SSRVIGMRKTLVFYKGRAPNGRKTDWIMHEYRL 164
                         **************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-5722182IPR003441NAC domain
PROSITE profilePS5100556.9227182IPR003441NAC domain
PfamPF023651.5E-2728164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MCFALLGRSC KVIRNRSVMM VEQGELVPPG FRFHPTEEEL VGYYLARKVA RSSCDDLDII  60
QEVDLYRIEP WDLQERCKLG GAAGHDDGGQ TTSEWYFFSY KDRKYPSGTR TNRATAAGFW  120
KATGRDKPVL SSSRVIGMRK TLVFYKGRAP NGRKTDWIMH EYRLQPSNHQ EEGWVVCRAF  180
QKPIPNQRPF VFPTYATPAG YCYDHLPSMD GSHQYLQVGG GPAPHALAAG NSFFPQQFYS  240
DDDDLLESKK HDNLFSSILP PLESPTAAIA ACAQQRAAAH VVASENDDEL MVQGGGGHAA  300
AAAAGAIDWN FLDTLLSTTT SQLLEPSTLL Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-482718215168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G003900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3730029e-59AK373002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3017O09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959950.10.0NAC domain-containing protein 30 isoform X1
TrEMBLA0A368Q9S30.0A0A368Q9S3_SETIT; Uncharacterized protein
STRINGSi022723m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.14e-85vascular related NAC-domain protein 7