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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sevir.2G448900.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
NAC |
| Protein Properties |
Length: 325aa MW: 35542.2 Da PI: 5.1249 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.2G448900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 177.9 | 2.6e-55 | 19 | 145 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrFhPtd el+v+yL++k+ ++++++ vi+evd++k+ePwdLp k+k +ekewyfF+++d+ky+tg r+nrat sgyWkatgkdke
Sevir.2G448900.1.p 19 LPPGFRFHPTDGELIVDYLTRKALNRRFSC-IVITEVDLNKTEPWDLPGKAKMGEKEWYFFCHKDRKYPTGARTNRATPSGYWKATGKDKE 108
79****************************.99***************99999************************************** PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
+++ ++ lvg++ktLvfy+grap+g kt Wvmheyrle
Sevir.2G448900.1.p 109 IYR-GRDLVGMRKTLVFYTGRAPRGGKTPWVMHEYRLE 145
***.999*****************************85 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MSDVSATMNL GEEESPLVLP PGFRFHPTDG ELIVDYLTRK ALNRRFSCIV ITEVDLNKTE 60
PWDLPGKAKM GEKEWYFFCH KDRKYPTGAR TNRATPSGYW KATGKDKEIY RGRDLVGMRK 120
TLVFYTGRAP RGGKTPWVMH EYRLEGKLPP NLPRAAKDEW AVCRVFNKDL AAKAGQMAPA 180
AAVMEPTMDF EDIFGAELPP LMDSPFAVDD LLDLKGGAGA GSSGSGAAAG TGSGGGYQVK 240
AEQQNEPPQP IQEPTYFSLP AASNPGGYPH QAIRERCPEQ APALPSPSVG ETALDADMSS 300
RPYPELDDLL LDGGYLDYSN MWKF*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-54 | 15 | 173 | 13 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-54 | 15 | 173 | 13 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-54 | 15 | 173 | 13 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-54 | 15 | 173 | 13 | 170 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 4e-54 | 15 | 173 | 13 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 4e-54 | 15 | 173 | 13 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
