PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G446200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 346aa    MW: 35274.7 Da    PI: 7.3068
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G446200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.12e-24134195159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDg +WrKYGqK++++s+++rsYYrCt++   gC+++++v++s+++p+ ++i Y g+H+++
  Sevir.2G446200.1.p 134 LDDGNSWRKYGQKHIQDSPNARSYYRCTHKpdqGCRATRQVQTSDDNPSEFVISYFGHHTCR 195
                         58***************************9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-25121197IPR003657WRKY domain
SuperFamilySSF1182903.79E-24128197IPR003657WRKY domain
PROSITE profilePS5081121.39129197IPR003657WRKY domain
SMARTSM007742.2E-33134196IPR003657WRKY domain
PfamPF031061.1E-22135195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MASSGSGGGG GGGGGGSLSS PPAAAPRAVV DNLIDVRARA EILRNMLQGS PTPPGTPAET  60
APAGTSELID GIMSSLSSAL SALDTPGGGG GGQGQGRRRR RAGAVAGSGP QRRNMSTRRR  120
SHSPFLKTVT TSTLDDGNSW RKYGQKHIQD SPNARSYYRC THKPDQGCRA TRQVQTSDDN  180
PSEFVISYFG HHTCRDPSTM PLVIHDDTAP PDSANLISFG STAAMGASTS THNITVPPPH  240
AFDPTTMLVS RFVYRYSSSL PAQDHRCGSE EVHSSSSPAG DLTAVVGSAG MASSATVGSA  300
PAEYMACGAG GTGSFPSSPS SLGFMTGSFG SFGNAGDDDL FGFDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-25128195269OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1516SGGGGGGGGGGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G446200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958704.10.0probable WRKY transcription factor 38
TrEMBLK3ZUW40.0K3ZUW4_SETIT; Uncharacterized protein
STRINGSi030395m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-21WRKY DNA-binding protein 46