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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.2G445800.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
bZIP |
Protein Properties |
Length: 372aa MW: 39747.6 Da PI: 6.9265 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.2G445800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 32.1 | 2.5e-10 | 167 | 214 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52
kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l
Sevir.2G445800.1.p 167 KRAKRIIANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLF 214
9****************************************9888765 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 372 aa
Download sequence Send
to blast |
MAMPPKPGDP PQRSPGRSPN LNLPCPLPPV PGGAPPPPQP GGGLPPPRVG QHRRARSEVA 60 FRFPDDLGAG GGAGFDEIGS EDDLFSTFMD MDKIAGADRD RAAETSSPPR PAKHRHSASF 120 DGFGMGPAAG GTGGQQDGAG GVFGEVMEAK KAMSSEQLAE LAAIDPKRAK RIIANRQSAA 180 RSKERKARYI TELERKVQTL QTEATTLSAQ LTLFQRDTTG LSAENAELKI RLQAMEQQAH 240 LRDALNDALK QEVERLKIAT GEMSKSNEPY NMGMQHVTYS PSFFQLSEQH AVQHHGNIQL 300 PPHFQQPPPS VPSHQMLSHP NSLSDMMQQD SLGRLQGLDI GKGSVAVKSE AEVMVKSEGS 360 SISAGESNST F*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU964870 | 0.0 | EU964870.1 Zea mays clone 282242 transcription factor RF2b mRNA, complete cds. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Dai S,Zhang Z,Bick J,Beachy RN
Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] - Liu Y,Dai S,Beachy RN
Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] - Dai S, et al.
Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]
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