PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G419800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 311aa    MW: 34499.6 Da    PI: 7.089
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G419800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.1e-35291212103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+ +++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+
  Sevir.2G419800.1.p  29 FLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKH 110
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll +i+r+ks+
  Sevir.2G419800.1.p 111 LLAEIHRRKSS 121
                         ********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.1E-5825118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3326118IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-3726118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.6E-3129118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-192952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAFLVERCGE MVVSMETSPT HAKPVPAPFL TKTYQLVDDP CTDHIVSWGE DDTTFVVWRP  60
PEFARDLLPN YFKHNNFSSF VRQLNTYGFR KIVADRWEFA NEFFRKGAKH LLAEIHRRKS  120
SQPLPTPLPP HQPYHHHHHH LHHHHLNPFS PPPPPPTQPV YHFQEEPAAA HGVHGGSNGG  180
DGSGGGDFLA ALSEDNRQLR RRNSLLLSEL AHMKKLYNDI IYFLQNHVAP VTSPSSAAHH  240
ASLPSAGAAS SCRLMELDPG SPSPPPRPEA AEDAGDGTVK LFGVALQGKK KKRAHREDGD  300
DDHEQGSSEV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-212512117123Heat shock factor protein 1
5d5u_B1e-211311812129Heat shock factor protein 1
5d5v_B1e-211311812129Heat shock factor protein 1
5d5v_D1e-211311812129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G419800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0541480.0BT054148.1 Zea mays full-length cDNA clone ZM_BFb0133K13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958473.10.0heat stress transcription factor B-4b
SwissprotQ7XHZ01e-130HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLK4A2Z10.0K4A2Z1_SETIT; Uncharacterized protein
STRINGSi033243m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-64heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]