 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sevir.2G416900.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
GeBP |
| Protein Properties |
Length: 350aa MW: 37904.3 Da PI: 6.0064 |
| Description |
GeBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.2G416900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF573 | 111.8 | 4.4e-35 | 81 | 180 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqki 88
lfqrlw+eeDeiv+L+G+ +f+a +g+ +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ ++sg +sf+++h+q i
Sevir.2G416900.1.p 81 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRESGATFSFRSPHEQAI 171
79************************99877778***************************************8999************** PP
DUF573 89 felskkiWg 97
fe+++ iW+
Sevir.2G416900.1.p 172 FEIARNIWR 180
********8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MPPTGDDPSA AAGISFPDAD GGGGGDSEDG DFADAHLLDP TDPSLHNPTT SSATGLPHAV 60
PAGGSGGGPV TSGNGGERRP LFQRLWTEED EIVILRGFAE FTAARGTAFA SHQYDTDPFY 120
EDMRRRLQLD FSKSQLVEKL RRLKRKYRNC VSRLRESGAT FSFRSPHEQA IFEIARNIWR 180
PTNKHGRDPS ADSDDEDAAA NTSPNGEVKS PSGRQRRRRR ATDFAAASGT APATSMVQPP 240
QPVQLPVSVP VKMEDSLPAL PQTQMPVTVT MDGSEPLRLP VMSPQSVINV GTNPFGTKLP 300
EPPLGLPMEG EKWRKQRILE LEVYLKRIEL LQNQAKATLE ELKSSTPGT*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT041652 | 0.0 | BT041652.1 Zea mays full-length cDNA clone ZM_BFb0025B02 mRNA, complete cds. |
| GenBank | EU969972 | 0.0 | EU969972.1 Zea mays clone 337956 hypothetical protein mRNA, complete cds. |
| GenBank | JX428455 | 0.0 | JX428455.1 Zea mays subsp. mays clone pUT3049 GBP12 GeBP type transcription factor mRNA, partial cds. |
| GenBank | KJ726797 | 0.0 | KJ726797.1 Zea mays clone pUT2289 GeBP transcription factor (GBP12) mRNA, partial cds. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT3G04930.2 | 1e-35 | DNA-binding storekeeper protein-related transcriptional regulator |
