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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G406700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | CAMTA | ||||||||
Protein Properties | Length: 1030aa MW: 114188 Da PI: 5.5134 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 180.8 | 1.7e-56 | 21 | 136 | 2 | 117 |
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 l+ ++rwl+++ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+e+n+ Sevir.2G406700.1.p 21 LEAQNRWLRPTEICQILSNYKKFSIAPEPPNRPPSGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEDNE 111 5679*************************************************************************************** PP CG-1 93 tfqrrcywlLeeelekivlvhylev 117 +fqrr+ywlLee + +ivlvhyle Sevir.2G406700.1.p 112 NFQRRTYWLLEEGFMNIVLVHYLEI 136 **********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 81.248 | 16 | 142 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 5.7E-77 | 19 | 137 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.1E-50 | 22 | 135 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 8.8E-7 | 443 | 530 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 6.7E-6 | 444 | 517 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 9.97E-18 | 444 | 530 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 1.71E-17 | 621 | 735 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.16E-12 | 622 | 733 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 1.0E-17 | 635 | 736 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.839 | 642 | 735 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 10.419 | 675 | 707 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0011 | 675 | 704 | IPR002110 | Ankyrin repeat |
Pfam | PF00023 | 4.0E-5 | 676 | 706 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 9.82E-8 | 847 | 899 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.045 | 848 | 870 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.919 | 849 | 878 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0055 | 850 | 869 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.027 | 871 | 893 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.45 | 872 | 896 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 7.9E-5 | 874 | 893 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1030 aa Download sequence Send to blast |
MAEIRKYAMS NQPPDIAQIL LEAQNRWLRP TEICQILSNY KKFSIAPEPP NRPPSGSLFL 60 FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEDN ENFQRRTYWL 120 LEEGFMNIVL VHYLEIKGGK QNFNRAKEAE ENAGLSSADS PACSNSFASQ SQVASQSMDA 180 ESPISGQISE YEDAETDNCR ASSRYHPFTE MQQPVDGIMM GNFLGASAPS ASVNNLGAGY 240 LGEMQPTPAN FTNHFVTHDD ISSAFNETGA GLRGGPKTPI DSMRFSEPVP EYPGGFTEPT 300 LYSSVATVGN NLDDSLQTFM SEALYTNNLT QNEVDALNAA GITSSQAEND GYTDQSARYP 360 LLKQSSLDLF KIEPDGLKKF DSFSRWMSNE LAEVADLDIK SSSDAFWSTT ETVNVADGSS 420 IPINEQLDAF VVSPSLSQDQ LFSIIDVSPS WAYNGTKTKV LITGTFLAKK EDVENSRWSC 480 MFGDVEVAAE VLVDGSLRCY TPVHHSGRVP FYVTCSNRVA CSEVREFEFR DSETHYMETS 540 DPHTTGINEM HLHIRLEKLL SLGPEDYEKY VLSNGNKSEL VDTINSLMLD DKLSNMALSS 600 GEKELSTVRD QNVEKQVKEK LYYWLIHKIH DDGKGPNVLG KEGQGVIHLV AALGYDWAIK 660 PIVAAGVKVN FRDIRGWTAL HWAASCGRER TVGALIANGA DPGALTDPTQ QFPSATPADL 720 ASENGHKGIA GFLAESALTN HLSALTLKES QGGNVEEIGG LTAAEEFAEP SSAQLACVDS 780 QEESLKDSLG AVRKSTQAAA RIFQAFRVES FHRKKVIEYG DDDCGLSDER TLSLISLKNA 840 KPGHSDMPMH SAAVRIQNKF RGWKGRKEFM IIRQKIVKIQ AHVRGHNVRK NYRKVVWSVG 900 IVEKVILRWR RKRRGLRGFQ AEKQLEGPSS QIQPAKSEAE DEYDYLKDGR KQAEGRLQRA 960 LARVHSMTQY PEARDQYRRL QTCVNELQES QAMQDGMLSD AAGTDGGDLM AELEELCRGD 1020 GDAPMSTIS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G406700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ305916 | 1e-155 | GQ305916.1 Pennisetum glaucum x Pennisetum squamulatum clone PsCMD3_0_246 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958362.1 | 0.0 | calmodulin-binding transcription activator 3 | ||||
TrEMBL | K3ZQB7 | 0.0 | K3ZQB7_SETIT; Uncharacterized protein | ||||
STRING | Si028797m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G406700.1.p |