PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G394300.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YA
Protein Properties Length: 279aa    MW: 30058.2 Da    PI: 9.9287
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G394300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA107.69.8e-34138194158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh+hA++R+RgsgGrF
  Sevir.2G394300.2.p 138 EEPIYVNAKQYHAILRRRQTRAKLEAQNKL-VKGRKPYLHESRHRHAMKRARGSGGRF 194
                         69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.7E-38136197IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.703137197IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.4E-28139194IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.1E-25140162IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860142162IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.1E-25171194IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSKSNHGVLS GNDHEMKHLG HKIHDRDSSS GSGQSHQEAS AVSETSLNEH TSIQSDNDEG  60
HGKHNQFTVK PVLSMGKQGS AFSPPKLDYN ASFACVPYTA DAYYGGVLTG YPPHAVVHPQ  120
QNQTTNAPVV LPVEPAAEEP IYVNAKQYHA ILRRRQTRAK LEAQNKLVKG RKPYLHESRH  180
RHAMKRARGS GGRFLNTKQL QEQNQQHQAS GGSSCSKVIG NTISSQSDPN PTTPSAPASS  240
DTASASRANQ DRTCFPSVGF RPAMNFSEQG GGSAKLVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-24138213274NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178187RHRHAMKRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G394300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958253.10.0nuclear transcription factor Y subunit A-4 isoform X2
RefseqXP_004958254.10.0nuclear transcription factor Y subunit A-4 isoform X2
RefseqXP_012698906.10.0nuclear transcription factor Y subunit A-4 isoform X2
RefseqXP_012698907.10.0nuclear transcription factor Y subunit A-4 isoform X2
RefseqXP_022679647.10.0nuclear transcription factor Y subunit A-4 isoform X2
RefseqXP_022679648.10.0nuclear transcription factor Y subunit A-4 isoform X2
TrEMBLK3ZVX00.0K3ZVX0_SETIT; Uncharacterized protein
STRINGSi030663m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.13e-40nuclear factor Y, subunit A5