PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G389300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 425aa MW: 44143.1 Da PI: 6.2027 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 15 | 35 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+Fs+ +L H+r+H Sevir.2G389300.1.p 15 CKVCGKCFSSGRSLGGHMRSH 35 ********************9 PP | |||||||
2 | zf-C2H2 | 18.7 | 4.8e-06 | 107 | 127 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk Fs++ +L H+r+H Sevir.2G389300.1.p 107 CRECGKLFSSWRSLFGHMRSH 127 ********************9 PP | |||||||
3 | zf-C2H2 | 16.2 | 2.9e-05 | 285 | 307 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp Cgk+Fs+ L H +H Sevir.2G389300.1.p 285 YECPGCGKVFSSYQALGGHRASH 307 99***********9999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.21E-9 | 13 | 35 | No hit | No description |
SMART | SM00355 | 0.047 | 13 | 35 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 13 | 35 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.9E-7 | 13 | 36 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.429 | 13 | 35 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 15 | 35 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.21E-9 | 100 | 127 | No hit | No description |
SMART | SM00355 | 0.02 | 105 | 127 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.408 | 105 | 132 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.1E-5 | 107 | 127 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.2E-4 | 107 | 127 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 107 | 127 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.18E-5 | 283 | 309 | No hit | No description |
Pfam | PF13912 | 1.1E-11 | 284 | 309 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.6E-4 | 284 | 308 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.616 | 285 | 312 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.031 | 285 | 307 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 287 | 307 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MDVVGMELAA ARHGCKVCGK CFSSGRSLGG HMRSHLPLGE AAAAEGDAAD ELVRASANGG 60 RSSDGVVGYG LRENPRKTRR LSDFADDDDE EGGGDGGGGG DGERKACREC GKLFSSWRSL 120 FGHMRSHASG GRDRDEEEDV DVEGELVPEE AEAEEAEMAV ATVEAPVLAP AAVTALAAAP 180 RRRRRSMRVA APPPAAPPPV PCGFEKEPED VALCLLMLSR DTGVRSSAVK EEPFESAKKR 240 AGLPRSGYAR NSDDDAKIKG RVPKGRKRSS LKQQLDAVAP KRTRYECPGC GKVFSSYQAL 300 GGHRASHKRI NTSCSAPKVA PTAAASPAPE PSSETYASFS TLSPSASPDS VAIGFGKLNA 360 QAAAEAAVVF SSGKAPGGHK LSHTMPADGG ELYAGGADQE QEQHSPAAVG FLDLNFPPAP 420 PEEA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G389300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003840 | 4e-55 | AP003840.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1634_B10. | |||
GenBank | AP003915 | 4e-55 | AP003915.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1579_C03. | |||
GenBank | AP014963 | 4e-55 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958213.1 | 0.0 | zinc finger protein ZAT9 | ||||
TrEMBL | A0A368Q9B0 | 0.0 | A0A368Q9B0_SETIT; Uncharacterized protein | ||||
STRING | Si033303m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3861 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-13 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G389300.1.p |