PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G384600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 265aa    MW: 26230.3 Da    PI: 8.2196
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G384600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00074107129123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ Cgk++++   L  H  +H
  Sevir.2G384600.1.p 107 YECSVCGKVYPSYQALGGHKTSH 129
                         99**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.69E-8107129No hitNo description
PROSITE profilePS5015710.97107134IPR007087Zinc finger, C2H2
SMARTSM003550.022107129IPR015880Zinc finger, C2H2-like
PfamPF139128.2E-14107131IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
SuperFamilySSF576672.69E-8164191No hitNo description
PfamPF139128.9E-12168193IPR007087Zinc finger, C2H2
PROSITE profilePS501579.224169191IPR007087Zinc finger, C2H2
SMARTSM003550.43169191IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MALDAAVDVS SKPPVPPPSP PRMDSWARGG RRSKRRAGSP SGSGGGGGGG AEQSEEEYLA  60
LCLLMLSRGV RGDAEDGGGG VVVASNSKSA GAAATTAAAA ARASQGYECS VCGKVYPSYQ  120
ALGGHKTSHR KPPPTPLAAP TPQAAAAAPA GDEPAPGDGG GAHAEEKVHQ CSLCLRTFPS  180
GQALGGHKRL HYEGGAAGAD GVKADKDAAK TKATAAQQAT SVLRDFDLNL PAAAAAATAA  240
TVDEAESALP EAKRARMTTM LLVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G384600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958179.11e-108zinc finger protein 1-like
TrEMBLA0A368Q7E31e-107A0A368Q7E3_SETIT; Uncharacterized protein
STRINGPavir.J16973.1.p6e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-23C2H2 family protein