PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G372300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | YABBY | ||||||||
Protein Properties | Length: 164aa MW: 17576 Da PI: 6.6528 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 132.3 | 6.3e-41 | 15 | 160 | 7 | 168 |
YABBY 7 seqvCyvqCnfCntilavsvPsts..lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +e++ yvqC+fC til+vsvP +++v+v+CG C+ +lsv++ + a+ + ll+e + ++++s++ Sevir.2G372300.1.p 15 PERLGYVQCSFCATILLVSVPCGGglQLETVAVQCGNCAGILSVTVPPSPP---ASIE-------LLLQEPALDPP-----PRDSDESSAE 90 899******************98622567999***********99876532...2222.......23333333322.....2223333333 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 + + e++ p v++PP ++qr Psayn+fikeei+rika +P+i+h+eafsaa+knWah+P+i Sevir.2G372300.1.p 91 DREAEAAVAENHAF---PAVNKPPVRKQRTPSAYNCFIKEEIRRIKARDPNITHKEAFSAASKNWAHLPRIQQ 160 33322233344444...479**************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.8E-43 | 15 | 159 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.62E-7 | 107 | 157 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.6E-5 | 114 | 159 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MASAAHHPCF GGLLPERLGY VQCSFCATIL LVSVPCGGGL QLETVAVQCG NCAGILSVTV 60 PPSPPASIEL LLQEPALDPP PRDSDESSAE DREAEAAVAE NHAFPAVNKP PVRKQRTPSA 120 YNCFIKEEIR RIKARDPNIT HKEAFSAASK NWAHLPRIQQ KEN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G372300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958092.1 | 1e-115 | protein YABBY 7 | ||||
Swissprot | A2PZN8 | 3e-57 | YAB7_ORYSJ; Protein YABBY 7 | ||||
TrEMBL | A0A368Q749 | 1e-116 | A0A368Q749_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ba00601.1.p | 5e-95 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13625 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 3e-31 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G372300.1.p |