PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G368500.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 679aa MW: 72288.1 Da PI: 7.2147 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.8 | 3.7e-08 | 282 | 304 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f+r G C+ Gd+C F+Hg Sevir.2G368500.3.p 282 VPCPNFRRPGGCPSGDSCEFSHG 304 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 1.76E-14 | 71 | 151 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.7E-16 | 72 | 152 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 17.502 | 73 | 148 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 9.8E-10 | 73 | 140 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.736 | 73 | 97 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.3 | 73 | 103 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 1.02E-13 | 75 | 151 | No hit | No description |
PROSITE profile | PS50088 | 12.876 | 108 | 143 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0033 | 108 | 140 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 7.7E-5 | 109 | 124 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 7.7E-5 | 127 | 141 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50103 | 13.995 | 278 | 306 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-4 | 278 | 305 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-5 | 279 | 307 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-6 | 282 | 305 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-6 | 282 | 304 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-4 | 310 | 343 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 21 | 314 | 337 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MGDLADLACA GDAARSHLAG AGRRDRLAEL LELAAADDAA AFREKLAGAG GDGDAAELAD 60 GVGLWYGRSK AYEPRTPLMV AATYGSAEVV SLLLGLGCVD VNRRPGVDGA TPLHCAASGG 120 SRNAVAIVKL LLAAGADPVT PDSAGRFPAD VILAPPASPD ALGDLEMLLG RRRGLAVTTS 180 VPSGSSSPPL SSSPDEGNRS PSSRSSSLSP ITVDRAKKEY PVDPTLPDIK SSVYASDEFR 240 MFAFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKHPYT AVPCPNFRRP GGCPSGDSCE 300 FSHGVFESWL HPSQYRTRLC KEGAACARRI CFFAHDEDEL RHVPHNSGAG LLSPRASSSI 360 DMTAAAALGL LPGSPTRHFV PPPLSPSAAN NGGGAAAHWL QGSRLRSSFN ARDAQADDLG 420 ALLEWESQYL GALSLPQSSR SQPRLSTGLS IHPTAMAPSN LEEMYASDVA MSPRFTNDQA 480 HSVYSPAHKS ALLNKFHHQQ KGLLSPVNTN RMFSPRGLDP SIIHSPFGGM SPRSPRTMEP 540 TSPLSARVGA TVTQPQRDMF DHFSSMNKHQ LPSVGSPRNL NASWGNIGTP KSKVDWGVDN 600 EELVRLRHPA QPGAAGEEPD VSWVQSLVNN AELNGKRGEM AGMASRPMSR PDLSSQGDLV 660 DQTMIASWLE QQMHLEPK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4gmr_A | 2e-12 | 22 | 151 | 15 | 142 | OR266 DE NOVO PROTEIN |
4gmr_B | 2e-12 | 22 | 151 | 15 | 142 | OR266 DE NOVO PROTEIN |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G368500.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054366 | 0.0 | BT054366.1 Zea mays full-length cDNA clone ZM_BFc0002O06 mRNA, complete cds. | |||
GenBank | BT054447 | 0.0 | BT054447.1 Zea mays full-length cDNA clone ZM_BFc0063F04 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801940.1 | 0.0 | zinc finger CCCH domain-containing protein 50-like | ||||
Swissprot | Q84SL2 | 0.0 | C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50 | ||||
TrEMBL | A0A2S3H3Q8 | 0.0 | A0A2S3H3Q8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J07041.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12850.1 | 1e-145 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G368500.3.p |
Publications ? help Back to Top | |||
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