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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sevir.2G366900.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
NAC |
| Protein Properties |
Length: 505aa MW: 53378.2 Da PI: 9.4594 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.2G366900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 172 | 1.8e-53 | 119 | 247 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+
Sevir.2G366900.1.p 119 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-AIIAEVDLYKFDPWELPDKASFGEHEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKP 208
79****************************.88***************8888999************************************ PP
NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
+l++ ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl
Sevir.2G366900.1.p 209 ILAStgNREKVGVKKALVFYRGKPPKGLKTNWIMHEYRL 247
**99888889***************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009753 | Biological Process | response to jasmonic acid |
| GO:0045995 | Biological Process | regulation of embryonic development |
| GO:0048317 | Biological Process | seed morphogenesis |
| GO:0080060 | Biological Process | integument development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 505 aa
Download sequence Send
to blast |
MPSAPPTPSF PARLRLRLWP ALLHRHGSIG LPTKPPKIPA QITRPPPPAQ LLPTDSVTNP 60
GYPRRCLLRS FTLEALPSCR DPSIHPAGDR PMRSMESTDS SSGSAPPPQQ KQTSSAPDLP 120
PGFRFHPTDE ELVVHYLKKK AASAPLPVAI IAEVDLYKFD PWELPDKASF GEHEWYFFSP 180
RDRKYPNGAR PNRAATSGYW KATGTDKPIL ASTGNREKVG VKKALVFYRG KPPKGLKTNW 240
IMHEYRLADA ASSAAANRPP PGAGGGKATS LRLDDWVLCR IYKKTTKLGA GDQQRSMECE 300
GSVEDAVMAA YPRHAAAAAM AAAAGGGGAH GGNYTSLLHH HEGHEDNFLD GLLTPEDAGG 360
LSAGATSLSH LAAAARAAPS ATKQLFVSSS TPFNWLDASA LAILPPTKRF HGYSGRDATD 420
GGMSLSSPSE RNQLGAVGAG AVDNDTGGGG ANAIPTFLTP LGVQAAATYH HHAILGTPVP 480
PEAAAAACSF QHPYQQLSGV NWNP*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 7e-71 | 119 | 286 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 7e-71 | 119 | 286 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 7e-71 | 119 | 286 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 7e-71 | 119 | 286 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 7e-71 | 119 | 286 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 7e-71 | 119 | 286 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 7e-71 | 119 | 286 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 7e-71 | 119 | 286 | 20 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}. |
