PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Sevir.2G364300.17.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 900aa MW: 101388 Da PI: 6.8286

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G364300.17.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85	1.2e-26	116	203	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++vGF vr+s+ ++++n it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+l+++++ +gk+++t+++ +HnH+la Sevir.2G364300.17.p 116 EFYNAYAEKVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KEAKCPRPETRIGCPASLTIRLTANGKYRLTEFVPNHNHQLA 203 6******************97766.************9999.999***********************************97 PP
2	FAR1	83.4	3.8e-26	245	331	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA ++GF+vr+++++ + +++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a++++++ ++gk++vt++++ HnH+l Sevir.2G364300.17.p 245 EFYSMYAGKIGFNVRRASMTVN-TENVITRRMFVCSKEGFREKKRGA-KRVKKPRPETRTGCPACMVIRLGTNGKYQVTEFVTFHNHQL 331 6**************99998.5666************9998.99***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-24	116	203	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.5E-22	245	331	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.9E-22	448	541	IPR018289	MULE transposase domain
Pfam	PF04434	3.4E-7	714	760	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.794	714	761	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.9E-7	736	763	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 900 aa Download sequence Send to blast
MPSALGEKDP QVAPGPATAP PQVQALRPAD ATGSPVIDPR LAQQSWPGHV VLLRPCVPWP 60 PQVPVPLLLS AANPQQNANA MADVAAADVN PAIDSCDENM LPKVNMLFDG ESDAYEFYNA 120 YAEKVGFFVR RSTLWTTSKN IITRRTFVCS REGFREKKKG AKEAKCPRPE TRIGCPASLT 180 IRLTANGKYR LTEFVPNHNH QLATASTIHM LKAKKIRRKA RAVRENLVDE TVSMPEFENE 240 DEAYEFYSMY AGKIGFNVRR ASMTVNTENV ITRRMFVCSK EGFREKKRGA KRVKKPRPET 300 RTGCPACMVI RLGTNGKYQV TEFVTFHNHQ LGAAAASDLA MASQSTENDQ EDGVDLADRS 360 PDDSVHKQNL INESATLNSI EGRSCKRYKC TKTPHYGDVG ATLEYLQKMQ HDNPSFFYAV 420 KSDENGNFTN FFWADSKSTV DFVHFGDVVC FDSGYALQGY GRPLALFTGL NHHKQTVIFG 480 AALLYDESNE AFRWLLDTFK MAMNGNPKTL LTDRSAAISE AVAATLPATA HRYCVWQIYQ 540 NALQQLSQAF HGSKTLECNF KRCLFDCEDE DEFLTAWKEM LEKYDLEDNQ WLADLYSIKE 600 KWALPYGRDA FYADMKSVQQ KESLTSELKK HLCLEYDLLN FFEQFERLLC DRRSAELEAD 660 VNANQSTKKP PMRMLRQAAN VYTPAAFKMF EREFELYMDC MLYNCGEMGT IFEYRISVED 720 NPKDHFVKFD SHNSMMNCTC KTFEFIGIPC RHMLKVLDTR NIKDLPVQYI VKRWTKDAKS 780 GSSNGGCAFS FEPESAQTKR YNLLCRIFSI AAARAATSAE SFTFMENQSN ILMDQVEQVI 840 QTRPPDIVDL IGANCDRTQS SVDNIVAEGI HGHTNFLNGS ADGSLTFPFT LGAGALDYR*

Sequence ? help Back to Top

Protein Sequence Length: 900 aa Download sequence Send to blast

MPSALGEKDP QVAPGPATAP PQVQALRPAD ATGSPVIDPR LAQQSWPGHV VLLRPCVPWP  60
PQVPVPLLLS AANPQQNANA MADVAAADVN PAIDSCDENM LPKVNMLFDG ESDAYEFYNA  120
YAEKVGFFVR RSTLWTTSKN IITRRTFVCS REGFREKKKG AKEAKCPRPE TRIGCPASLT  180
IRLTANGKYR LTEFVPNHNH QLATASTIHM LKAKKIRRKA RAVRENLVDE TVSMPEFENE  240
DEAYEFYSMY AGKIGFNVRR ASMTVNTENV ITRRMFVCSK EGFREKKRGA KRVKKPRPET  300
RTGCPACMVI RLGTNGKYQV TEFVTFHNHQ LGAAAASDLA MASQSTENDQ EDGVDLADRS  360
PDDSVHKQNL INESATLNSI EGRSCKRYKC TKTPHYGDVG ATLEYLQKMQ HDNPSFFYAV  420
KSDENGNFTN FFWADSKSTV DFVHFGDVVC FDSGYALQGY GRPLALFTGL NHHKQTVIFG  480
AALLYDESNE AFRWLLDTFK MAMNGNPKTL LTDRSAAISE AVAATLPATA HRYCVWQIYQ  540
NALQQLSQAF HGSKTLECNF KRCLFDCEDE DEFLTAWKEM LEKYDLEDNQ WLADLYSIKE  600
KWALPYGRDA FYADMKSVQQ KESLTSELKK HLCLEYDLLN FFEQFERLLC DRRSAELEAD  660
VNANQSTKKP PMRMLRQAAN VYTPAAFKMF EREFELYMDC MLYNCGEMGT IFEYRISVED  720
NPKDHFVKFD SHNSMMNCTC KTFEFIGIPC RHMLKVLDTR NIKDLPVQYI VKRWTKDAKS  780
GSSNGGCAFS FEPESAQTKR YNLLCRIFSI AAARAATSAE SFTFMENQSN ILMDQVEQVI  840
QTRPPDIVDL IGANCDRTQS SVDNIVAEGI HGHTNFLNGS ADGSLTFPFT LGAGALDYR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G364300.17.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT062235	0.0	BT062235.1 Zea mays full-length cDNA clone ZM_BFb0229O21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958034.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	A0A368Q679	0.0	A0A368Q679_SETIT; Uncharacterized protein
STRING	Pavir.Bb03075.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-107	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sevir.2G364300.17.p