PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G364100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 963aa MW: 105189 Da PI: 8.4773 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.1 | 1.6e-18 | 459 | 558 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d sg++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ Sevir.2G364100.1.p 459 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQAEGLPLKVQDASGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID- 547 89**************************666778888***************9989999999***9.********************987. PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 e++l +++++ Sevir.2G364100.1.p 548 PEGKLIMGFRK 558 77777777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-29 | 455 | 562 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-19 | 456 | 558 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.58E-22 | 457 | 558 | No hit | No description |
SMART | SM01019 | 5.4E-21 | 459 | 559 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.265 | 459 | 560 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-15 | 459 | 558 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.939 | 714 | 764 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 3.5E-11 | 719 | 761 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 963 aa Download sequence Send to blast |
MSAPAPQQAP PAQPPPPPPP PAAPAGVTAT PISVQPPPIQ PKPPPPPQQQ PQPAGPVSGP 60 PTPTPAQLLN LGPQPPLYRG PICWNSYCKD PDPNSFGRRG WKVRSGPPFS IYADLCGRCY 120 SQFEQGIYCE TFHSDEGGWR NCESCGRRVH CGCIVSIHKY QLRDAGGVDC AKCARNTRTA 180 MAPPSPVWAS PMHNSQNVAD RKDIPVKSWR PPAGQISSQW RQTNLWSVSS IQSDLQQRLA 240 FEFDRPSGSE KLLPGRTFIH AQERKFDDMH DRPTTPAGMN HIMRERDANG HGQPTNMDPA 300 YPYNLYHRDG PHPNNLHDPS HHGGENDSLS SRKVALPDAS TGVDGFKHDS HHPSILKDDP 360 PSLSVGLASN FASQNGPKDH IRIAPAQQQA QMASSSLQKQ FYSHPVTGYS EFQAQLRNGR 420 PRMDAKARSQ LLPRYWPRIT DQELQHLSND SNSVITPLFE KMLSASDAGR IGRLVLPKKC 480 AEAYFPPISQ AEGLPLKVQD ASGKEWIFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT 540 VTFSRIDPEG KLIMGFRKAT NMSSEQEQTT KPANGAPATS EANGKVSAPD SSPNAAISRQ 600 NKVNTETKSS SPVEQAATSK IDKDVSAPKE GPGTASSSPG PVKRKATNLT PKNKRLRMEN 660 EESMELKITW EEAQELLRPP PKAPSIVIVD GHEFEEYEEP PILGRKTYFA TDQSGSNHQW 720 AQCENCSKWR KLPADALMPS KWTCNDNKWD SERSSCEAAQ EISMEELAEL IPIKSGPGGA 780 KKPKSKIEGE AIDTSDGLDT LANLAILGEG EALPSQPTTK HPRHRPGCSC IVCIQPPSGK 840 GPKHKQTCTC NVCMTVRRRF RTLMLRREKR ATTDSPRRKE TGQSSQTVTQ AGSGLQATSA 900 NATNSSKKAV GNADGPEDMA VDHKVTSSPV KNHIDLNSQP ERDDEQSPKS GAAGALSRDN 960 PT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 1e-64 | 437 | 566 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G364100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054847 | 0.0 | BT054847.1 Zea mays full-length cDNA clone ZM_BFb0181D20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012699489.1 | 0.0 | B3 domain-containing protein Os07g0563300 isoform X2 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | K3ZQF2 | 0.0 | K3ZQF2_SETIT; Uncharacterized protein | ||||
STRING | Si028829m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7490 | 36 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-140 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G364100.1.p |