PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G357300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 402aa    MW: 43070.8 Da    PI: 4.7498
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G357300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.41.4e-102512532127
                 NAM  32 evikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgk....rknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapk 115
                         +++++vd++++ P+dL + ++   ++  wyf++ ++ k+++g+    r++  a+++  W++    k+v+   ++  g+   L + +++ ++
  Sevir.2G357300.1.p  25 HFVHHVDVCSAAPEDLVADLEPapGTGVWYFYCVKKYKSTHGRpgghRQRAiAASDTCWHSEAGAKDVKG--SQGGGTVCNLSYGRKDGRS 113
                         5699************853333226669********9999644444266556677999**********87..66689999******999** PP

                 NAM 116 gektdWvmheyr 127
                          ++  W+m ey 
  Sevir.2G357300.1.p 114 FTRLGWCMMEYD 125
                         ***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.6171141IPR003441NAC domain
SuperFamilySSF1019413.01E-1520141IPR003441NAC domain
PfamPF023651.7E-443124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAAEDTGDDA SIALLHRLRS GATVHFVHHV DVCSAAPEDL VADLEPAPGT GVWYFYCVKK  60
YKSTHGRPGG HRQRAIAASD TCWHSEAGAK DVKGSQGGGT VCNLSYGRKD GRSFTRLGWC  120
MMEYDDATGG GDHVLCKIYR SPRAQGKPSS AASKTSSGSK RKAGGEHTEA RPAKLLHEQD  180
TFFTNDYAMP STVAQVNVGG GEEQHLSTQD GEFVETSYGL LPSDVAQVNV EEWIRGMEMF  240
GGEEEQQISK PEQDDGFVKV PPLMTEDITV EDYLLAPETT SGEASGMPAT FTPPDADLLD  300
VLERDSEFRV LQEQQTLQMQ QAHAAEPDPM AEFAVLCVSL VEGECFSEPR HTERGGAHGS  360
PAVAVVVRNT DALLHDGTCA VAAARMATQN GLNAALRRAT A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G357300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463549.15e-50uncharacterized protein LOC8079646
TrEMBLA0A368Q6E20.0A0A368Q6E2_SETIT; Uncharacterized protein
STRINGSi039285m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4574632