PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G336100.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 200aa    MW: 20492.3 Da    PI: 10.2237
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G336100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.31.4e-4082159178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cq+e+C+adls+a +y+rrhkvC++hskapvvlv+gl+qrfCqqCsrfhelsefDe++rsCr rLa+hnerrrk++a
  Sevir.2G336100.2.p  82 RCQAERCNADLSDAATYNRRHKVCQTHSKAPVVLVAGLRQRFCQQCSRFHELSEFDETRRSCRLRLAGHNERRRKSSA 159
                         6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-3377144IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.86380157IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-3781161IPR004333Transcription factor, SBP-box
PfamPF031102.3E-3183156IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDRKDKSRRG SSSSASASSM AALAAAAAAG EGSSSGSAGE ALTPNGEEEQ KPAKLAAVGG  60
ASSSSPVPAR RGAAAGGGGG PRCQAERCNA DLSDAATYNR RHKVCQTHSK APVVLVAGLR  120
QRFCQQCSRF HELSEFDETR RSCRLRLAGH NERRRKSSAD THGGGSGGSN SGGGDGCRHA  180
DQDGRGHQGN PPPNHFQIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-3474156284squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G336100.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0654451e-96BT065445.2 Zea mays full-length cDNA clone ZM_BFb0161D05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957796.11e-139squamosa promoter-binding-like protein 13
SwissprotQ6Z4617e-51SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLK3ZX221e-138K3ZX22_SETIT; Uncharacterized protein
STRINGSi031154m1e-139(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-36squamosa promoter binding protein-like 3