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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G316700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 187aa MW: 19174.2 Da PI: 6.5066 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00025 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C++ F ++ L H++ H Sevir.2G316700.1.p 45 FACNYCHRKFYSSQALGGHQNAH 67 78******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.19E-6 | 43 | 72 | No hit | No description |
PROSITE profile | PS50157 | 11.032 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MENELAASGA HGVSLDDLSP RGRRSGPAVA AVPAVDSGRR PGESFACNYC HRKFYSSQAL 60 GGHQNAHKLE RTLAKRSRDI LAAAAPPSSS PPPTPAPPAV VFHAAPPERN NNNRDDDFLL 120 PATYGATWST GAAEDATAAQ QAAPPTPSVV MDMAGWGADT AAAADGGCGR LGHGRNGEEI 180 DLSLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G316700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086880 | 3e-57 | BT086880.2 Zea mays full-length cDNA clone ZM_BFb0022A09 mRNA, complete cds. | |||
GenBank | BT086917 | 3e-57 | BT086917.2 Zea mays full-length cDNA clone ZM_BFb0119B18 mRNA, complete cds. | |||
GenBank | BT087160 | 3e-57 | BT087160.2 Zea mays full-length cDNA clone ZM_BFb0177L16 mRNA, complete cds. | |||
GenBank | EU960522 | 3e-57 | EU960522.1 Zea mays clone 225835 zinc finger protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957624.1 | 1e-132 | zinc finger protein 6 | ||||
TrEMBL | K4A138 | 1e-131 | K4A138_SETIT; Uncharacterized protein | ||||
STRING | Si032580m | 1e-132 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 3e-18 | zinc finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G316700.1.p |