|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sevir.2G316300.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
Family |
Trihelix |
Protein Properties |
Length: 338aa MW: 36187.8 Da PI: 8.4452 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.2G316300.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 38.6 | 2.9e-12 | 24 | 127 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................rergferspkqCkekwenlnkrykkikegekkr.ts 73
+W++ + L+ea++ ++ +r+klk +W ++++ + + ++p+qCk+k+e+++kry+++ + + +
Sevir.2G316300.1.p 24 EWSEGGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAREVsahcaddaaaagkapggGGGNSAKTPNQCKNKIESMKKRYRAESAAVARAgPA 114
599********************************9999999***********987788899*****************998766665367 PP
trihelix 74 essstcpyfdqle 86
+ ++++f +++
Sevir.2G316300.1.p 115 AAGPSWRFFARMD 127
78889*****997 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MNGLPDADAA APLAAAAPPQ KRDEWSEGGI VRLLEAYEAK WLLRNRAKLK WSDWVDIARE 60 VSAHCADDAA AAGKAPGGGG GNSAKTPNQC KNKIESMKKR YRAESAAVAR AGPAAAGPSW 120 RFFARMDGLL KGPAICSGQV PQAELGNSID LRAPAKAEAE VVEADFAAQL PDAGPGAFSD 180 LMNIDTNGAV PEKAEKVDNS VQKESRAADS DANVSSPRSK VANEDVEEVD KVRDRPKKRK 240 STEFDIAKSI ELLASSYLKI EHARMEMYRE TERMRAEAEI KKGEMELKRT EIMAKTHLQI 300 AKLFAKRLKE GSGKTGGSSS VTAEVDTHTK KGENGSG*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC137592 | 1e-82 | AC137592.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence. |
GenBank | AK068834 | 1e-82 | AK068834.1 Oryza sativa Japonica Group cDNA clone:J013159M18, full insert sequence. |
GenBank | AK103673 | 1e-82 | AK103673.1 Oryza sativa Japonica Group cDNA clone:J033136A07, full insert sequence. |
GenBank | AP005090 | 1e-82 | AP005090.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1065_E04. |
GenBank | AP014965 | 1e-82 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT3G54390.1 | 1e-33 | sequence-specific DNA binding transcription factors |