 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sevir.2G312200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
NAC |
| Protein Properties |
Length: 246aa MW: 27685 Da PI: 4.9176 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.2G312200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 177.2 | 4.4e-55 | 6 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
lppGfrFhPtdeelv++yLk+k++g k+el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd
Sevir.2G312200.1.p 6 LPPGFRFHPTDEELVNYYLKRKIHGLKIEL-DIIPEVDLYKCEPWELAdKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKD 95
79****************************.99**************85335566888********************************* PP
NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
++vl+++g+ +g+kktLv+y+grap+g++tdWvmheyrl
Sevir.2G312200.1.p 96 RRVLHHGGRPIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 134
*************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MAPVGLPPGF RFHPTDEELV NYYLKRKIHG LKIELDIIPE VDLYKCEPWE LADKSFLPSR 60
DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVLH HGGRPIGMKK TLVYYRGRAP 120
QGVRTDWVMH EYRLDDKDAE DTLPIQDTYA LCRVFKKNAI CTEVDDLQAQ CSMALLEGAC 180
QQLLTAGSQE YQTPSPDVPV GSTSGGADDD ADKDESWMQF ISDDAWCSST ADGAEESTSC 240
VALAT*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 4e-52 | 1 | 159 | 15 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 4e-52 | 1 | 159 | 15 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 4e-52 | 1 | 159 | 15 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 4e-52 | 1 | 159 | 15 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 4e-52 | 1 | 159 | 15 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 4e-52 | 1 | 159 | 15 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 4e-52 | 1 | 159 | 15 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 4e-52 | 1 | 159 | 15 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ728059 | 0.0 | KJ728059.1 Zea mays clone pUT6205 NAC transcription factor (NAC121) mRNA, partial cds. |
