PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G296400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | SRS | ||||||||
Protein Properties | Length: 227aa MW: 22979.7 Da PI: 8.6782 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 127.1 | 2e-39 | 49 | 194 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvk.stWvpaakr.rerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 g ++CqdC ak +Cah+RCR CC srgf C hv+ s vpa+ + +erqq laaas+++ a+ a+ + kr+ + ++ +++t+ s Sevir.2G296400.1.p 49 GIIRCQDCWLLAKAGCAHRRCRSCCGSRGFVCPAHVRpSAHVPASSQcSERQQILAAASAST-AAVAAPTRKRPLDA---VATPTTTTSSS 135 5689********************************9899***9866267777777765444.33344444444443...34444444556 PP DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++ + +++ +ev +avfr+vr++ +++e+aY+++v+igGhvf+G+Lyd G+++ Sevir.2G296400.1.p 136 VGQPAAATVLERFAREVTLDAVFRRVRLGP---DDAEVAYHATVTIGGHVFRGVLYDVGPHS 194 677788899999***************987...6789**********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.6E-42 | 51 | 193 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.1E-12 | 53 | 93 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.5E-14 | 148 | 192 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MFDAASVLSA TSAEGSLELR QQQPVHGAAS SSPPPPCGTP AGGGGGSGGI IRCQDCWLLA 60 KAGCAHRRCR SCCGSRGFVC PAHVRPSAHV PASSQCSERQ QILAAASAST AAVAAPTRKR 120 PLDAVATPTT TTSSSVGQPA AATVLERFAR EVTLDAVFRR VRLGPDDAEV AYHATVTIGG 180 HVFRGVLYDV GPHSRRSTAS SDTGGSSDGS WRSTGGGGGL DLTLRL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G296400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004959623.1 | 1e-123 | protein SHI RELATED SEQUENCE 2 | ||||
TrEMBL | K3ZZU7 | 1e-158 | K3ZZU7_SETIT; Uncharacterized protein | ||||
STRING | Si032132m | 1e-159 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP21053 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 3e-13 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G296400.1.p |