PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G296400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SRS
Protein Properties Length: 227aa    MW: 22979.7 Da    PI: 8.6782
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G296400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702127.12e-39491944154
              DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvk.stWvpaakr.rerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 
                         g ++CqdC   ak +Cah+RCR CC srgf C  hv+ s  vpa+ + +erqq laaas+++ a+ a+ + kr+ +     ++ +++t+ s
  Sevir.2G296400.1.p  49 GIIRCQDCWLLAKAGCAHRRCRSCCGSRGFVCPAHVRpSAHVPASSQcSERQQILAAASAST-AAVAAPTRKRPLDA---VATPTTTTSSS 135
                         5689********************************9899***9866267777777765444.33344444444443...34444444556 PP

              DUF702  93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                          +++   +  +++ +ev  +avfr+vr++    +++e+aY+++v+igGhvf+G+Lyd G+++
  Sevir.2G296400.1.p 136 VGQPAAATVLERFAREVTLDAVFRRVRLGP---DDAEVAYHATVTIGGHVFRGVLYDVGPHS 194
                         677788899999***************987...6789**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.6E-4251193IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.1E-125393IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.5E-14148192IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MFDAASVLSA TSAEGSLELR QQQPVHGAAS SSPPPPCGTP AGGGGGSGGI IRCQDCWLLA  60
KAGCAHRRCR SCCGSRGFVC PAHVRPSAHV PASSQCSERQ QILAAASAST AAVAAPTRKR  120
PLDAVATPTT TTSSSVGQPA AATVLERFAR EVTLDAVFRR VRLGPDDAEV AYHATVTIGG  180
HVFRGVLYDV GPHSRRSTAS SDTGGSSDGS WRSTGGGGGL DLTLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G296400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959623.11e-123protein SHI RELATED SEQUENCE 2
TrEMBLK3ZZU71e-158K3ZZU7_SETIT; Uncharacterized protein
STRINGSi032132m1e-159(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2105377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.13e-13Lateral root primordium (LRP) protein-related