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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sevir.2G295700.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
SRS |
| Protein Properties |
Length: 323aa MW: 32828.3 Da PI: 8.9298 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.2G295700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 223.2 | 5.3e-69 | 99 | 248 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssa 94
g++sCqdCGnqakkdCah+RCRtCCksrg++C+thvkstWvpaakrrerqqqlaa++++aaa++a a + r+ +++ +++ ++++ ++ss+
Sevir.2G295700.1.p 99 GGVSCQDCGNQAKKDCAHQRCRTCCKSRGYSCSTHVKSTWVPAAKRRERQQQLAALAASAAATTAGAGPSRDPTKRPRSRLSVATPTTSSG 189
7899****************************************************9999999988888888888899999999******* PP
DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
++++ + ++++P+evsseavfrcvr++ vd++e+e+aYqt+vsigGhvfkGiL+d G++
Sevir.2G295700.1.p 190 DQQMVTVAERFPREVSSEAVFRCVRLGPVDQAEAEVAYQTTVSIGGHVFKGILHDVGPH 248
*********************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 323 aa
Download sequence Send
to blast |
MAGFPLGGGG HSHSRDAPAP SVPPVHPSDA AAASFLYATR AGGGLQLWQQ HEQQHHPFYA 60
SNIIRFSDDP PGAAPSLTGA ASSSSSRGTR GGGGGSSGGG VSCQDCGNQA KKDCAHQRCR 120
TCCKSRGYSC STHVKSTWVP AAKRRERQQQ LAALAASAAA TTAGAGPSRD PTKRPRSRLS 180
VATPTTSSGD QQMVTVAERF PREVSSEAVF RCVRLGPVDQ AEAEVAYQTT VSIGGHVFKG 240
ILHDVGPHSL GNPGGSGGAI EYHFRHAGDG SPPSTAAAGD VGGGGVANVI VSSAVVMDPY 300
PTPGPYGAFP AGAAFFHGHP RQ*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT033411 | 0.0 | BT033411.1 Zea mays full-length cDNA clone ZM_BFb0154O01 mRNA, complete cds. |
| GenBank | BT087618 | 0.0 | BT087618.1 Zea mays full-length cDNA clone ZM_BFb0133L22 mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT3G51060.1 | 2e-48 | Lateral root primordium (LRP) protein-related |
