PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G287700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 281aa    MW: 29966.8 Da    PI: 6.237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G287700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12116161454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  Sevir.2G287700.1.p 116 SHVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 161
                         89************************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.021112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-16114189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9115161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.06E-12115166No hitNo description
Gene3DG3DSA:4.10.280.101.1E-15116174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDDLRLSPCN SFSPPSPPPF FSHAGHPIIE FTSCEVPEQW LLGDVVVAKN EGYDDGDDLW  60
PVGSTLSTDS ELSVQPAPPP QPAPQQQEPG ATVPAQRPGK RRGRKPGTRP DGPTVSHVEA  120
ERQRREKLNR RFCDLRAAVP TVSRMDKASL LADAAAYIAE LRARVARLEA ESRRAAAARW  180
EPPVAASSCG PPGAPGHGDE AVEVRMLGPD AAAVRATSAA PHAAARLMVA LRSLELHVQH  240
ACVTRVHGMT VQDVVVDVPA QLHDDDGLRA ALLQMLQDSG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-19115171763Transcription factor MYC2
5gnj_B6e-19115171763Transcription factor MYC2
5gnj_E6e-19115171763Transcription factor MYC2
5gnj_F6e-19115171763Transcription factor MYC2
5gnj_G6e-19115171763Transcription factor MYC2
5gnj_I6e-19115171763Transcription factor MYC2
5gnj_M6e-19115171763Transcription factor MYC2
5gnj_N6e-19115171763Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G287700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0065251e-72AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03.
GenBankAP0072541e-72AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08.
GenBankAP0149651e-72AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126171e-72CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957382.10.0transcription factor MYC2
TrEMBLK3ZZ680.0K3ZZ68_SETIT; Uncharacterized protein
STRINGSi031900m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-15bHLH family protein