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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G279900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 272aa MW: 29776.1 Da PI: 7.7836 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.8 | 1.1e-09 | 121 | 168 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+ l+P + +k Ka iL + ++Y++sLq Sevir.2G279900.2.p 121 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 168 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.36E-17 | 115 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.28E-10 | 115 | 172 | No hit | No description |
PROSITE profile | PS50888 | 15.542 | 117 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.0E-17 | 117 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.2E-7 | 121 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-10 | 123 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MANFSHLSHQ HMEHGLANAS HGTPSFLFCH GTAPADSSSL ETSSGVLDTS PRGTASEDKK 60 IRKTREDCAS LSSAQSKDSN SKESTKKRGG KRERSSKEVD EEEEPKGYIH VRARRGQATD 120 SHSLAERVRR ERISERMRML QALVPGCDKV TGKALILDEI INYVQSLQNQ VEFLSMRIAS 180 LSPVLYGFGM DSDAFSDHTQ KMEGMLHHEA LAMPTSVMNR APSQAIMDTN TSNSSPSYEL 240 HGDGSANITF PQWQLHGARA KARAVQSSGF Q* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G279900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085581 | 1e-176 | BT085581.1 Zea mays full-length cDNA clone ZM_BFc0036H10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957313.1 | 0.0 | transcription factor bHLH137 | ||||
Swissprot | Q93W88 | 7e-51 | BH137_ARATH; Transcription factor bHLH137 | ||||
TrEMBL | A0A368Q3K6 | 0.0 | A0A368Q3K6_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ba01554.1.p | 1e-167 | (Panicum virgatum) | ||||
STRING | Pavir.J05063.1.p | 1e-166 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 6e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G279900.2.p |
Publications ? help Back to Top | |||
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