PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G268900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 742aa    MW: 80989.1 Da    PI: 4.5877
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G268900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM135.92.6e-42101682128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...................................kvkaeeke 57 
                         ppGfrF+Ptdeelv ++Lk+++ + + +    +++vd+yk++P++Lp                                    ++++++++
  Sevir.2G268900.1.p  10 PPGFRFSPTDEELVLYFLKRRIVSARPSP--YVADVDVYKSHPSHLPGthpppptppidriaccnpsgslltcthrccteersALQTGDRQ 98 
                         8********************99988555..69**************558**************************99998887777999* PP

                 NAM  58 wyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         w+fFs++d+ky++g+r++r+t +gyWkatgkd+ ++  +g++vg kktLv+++grap+ge+tdWvmhey+l
  Sevir.2G268900.1.p  99 WFFFSRTDRKYPNGSRASRTTGDGYWKATGKDRFICG-GGRAVGNKKTLVYHHGRAPRGERTDWVMHEYTL 168
                         ************************************9.99*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-13757IPR003441NAC domain
PROSITE profilePS5100547.4329191IPR003441NAC domain
PfamPF023651.7E-2310168IPR003441NAC domain
SuperFamilySSF1019411.07E-3393191IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
METPPPRRWP PGFRFSPTDE ELVLYFLKRR IVSARPSPYV ADVDVYKSHP SHLPGTHPPP  60
PTPPIDRIAC CNPSGSLLTC THRCCTEERS ALQTGDRQWF FFSRTDRKYP NGSRASRTTG  120
DGYWKATGKD RFICGGGRAV GNKKTLVYHH GRAPRGERTD WVMHEYTLLA DALPPAAQGR  180
ESYALYKLFQ KSGAGPKNGE QYGAPFREED WLDDDEEGVT ADASANSVPN TNNCPATVEE  240
HAIADRELPI EDLHELLSQI GNDQEEFGEA PLDFSTPATS HGQGQGWPSG GGDKAEVVDA  300
SVSDGAVVVA ENTCIDLPLG DIEQLLMQIS DDQQNAEFFS DFTPSVPQLQ LQCDNHQVWL  360
DAHRGQEVCA ADPTASGGAV VAAECTDTDL EGLLLQIASD QDMVEPLSDL SPPIPHHNFN  420
QVGIGDFHES HGAPVGNLSC TVQESTFVPQ TELRSQFPQS NLTNVPFSGE TNSSEGTSVP  480
HSVSGLISYN SQDADDEFLE INDFFDLEDV EQSANCTATE HLISATNGMF DNLEYSDAPT  540
FLPGPFDTAG EVAENQFFDF GSSGIQNQGF HYTTQVRTQN QAALNVRSHM KDNHVVLSSH  600
TSGTLNLHAA NEPPSRSSTA SQSWFNAALS TLLDSVPSSP ALAAEIENTV INRTLQRISS  660
FRSHQASGEE NTVINRTLQR ISSFRSQQAV REEPSTRRIQ VTRGGRLTFI SLLVILAAVM  720
WTFTAGSALN FCKGLWKSSS R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-371016816140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G268900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679824.10.0uncharacterized protein LOC101780745 isoform X1
TrEMBLK3ZR580.0K3ZR58_SETIT; Uncharacterized protein
STRINGSi029088m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91282840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.21e-61NAC domain containing protein 16