PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G263600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 398aa    MW: 41768.9 Da    PI: 8.6573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G263600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.8e-13325370655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR +i +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  Sevir.2G263600.1.p 325 SIAERVRRTKISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 370
                         689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.212319369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-16322381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.69E-13323374No hitNo description
Gene3DG3DSA:4.10.280.104.7E-15324378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-13325375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-10325370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MYGSPVPKDL NLPAAQPQPT RTPPPPQMSS PGLLRYRSAP STLLGEVMCG DQEFPGAAGH  60
GPDHAAADSV LARFLAGHHP EIPDCKPPRP VAAAHFMEDA ASMAASQQQQ QLMYQSQQQM  120
AAMEGLYRSV SSGCTEPGAT VGAGNSLLRQ SSSPAGFLNH LNMDNGYGNM LRAGMAGAGG  180
FRNGVSDARL KGQLSFSSRQ GSVMSQISEV GSEELDGGSS PEAAGSNGAP RSYSGIPGGY  240
PMGAWPDESS PTSSGAKRPR DSGGPAPQNG QRQPLAPQLS VPGGSNGTGK PASAEMAAIE  300
KFLQFQDAVP CKIRAKRGCA THPRSIAERV RRTKISERIR KLQELVPNME KQTNTADMLD  360
LAVDYIKDLQ KQVKVLNDGR ISCTCSAGKL LQNQFAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G263600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0836840.0BT083684.2 Zea mays full-length cDNA clone ZM_BFb0028K22 mRNA, complete cds.
GenBankEU9455100.0EU945510.1 Zea mays clone 275649 mRNA sequence.
GenBankEU9699620.0EU969962.1 Zea mays clone 337883 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957179.10.0transcription factor bHLH130 isoform X2
TrEMBLK3ZU000.0K3ZU00_SETIT; Uncharacterized protein
STRINGSi029614m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-58bHLH family protein