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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G248500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 345aa MW: 36479.3 Da PI: 8.2414 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.8 | 3.5e-12 | 119 | 181 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...........TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas........kapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P+a+ ++s + a+i+ A++++k+L+ Sevir.2G248500.1.p 119 QRMTHIAVERNRRKQMNEYLAVLRSLMPPAYaqrviiqrLPRSHHGDQASIVGGAINFVKELE 181 79***************************988******8888888**************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.14E-13 | 117 | 185 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-12 | 117 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.066 | 118 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-14 | 118 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-9 | 119 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-8 | 124 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MALEAVVLAV SQQQGGRFGC GAMAGGPWNG LLGGAEGVMG LSGAGAGSWD AAACSSSMLL 60 RGFQEPDNIL AAVAPPVESG GSVGQEAPAA ATSPAPAPTG RRKRRRTRVV KNKEEVESQR 120 MTHIAVERNR RKQMNEYLAV LRSLMPPAYA QRVIIQRLPR SHHGDQASIV GGAINFVKEL 180 EQLLQSLEAR RRSAQGPAAG ASGDDGAAPF AGFFTFPQYS MRAAAAPEHA PADATSRKCA 240 EGEEASGSKP SAVADVEATM VESHANLRVL SRRRPRQLLR LVVGLQDHRL TVLHLNMSSA 300 GQMVLYSFSL KVEDDCQLTS VDEIAAAAHQ IVEKTHQEQG CSLE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 105 | RKRRR |
2 | 101 | 106 | RKRRRT |
3 | 119 | 130 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G248500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957080.1 | 0.0 | transcription factor bHLH94-like | ||||
Swissprot | Q9C7T4 | 3e-70 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A368Q2B8 | 0.0 | A0A368Q2B8_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Bb02386.1.p | 1e-150 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 1e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G248500.1.p |
Publications ? help Back to Top | |||
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